Query= MSMg01no335_f14.b1 MSMg01no335_f14.b1 CHROMAT_FILE:
MSMg01no335_f14.b1 PHD_FILE: MSMg01no335_f14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:05 2005
(393 letters)
>mm_chr5_66495171_66495963
Length = 793
Score = 553 bits (286), Expect = e-162
Identities = 369/424 (87%), Gaps = 45/424 (10%)
Strand = Plus / Plus
Query: 1 gttgtattctgacaagattcaaatagagccacatagaaactcctggggaaataccaggtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gttgtattctgacaagattcaaatagagccacatagaaactcctggggaaataccaggtg 260
Query: 61 ttgtggttcaggcctgtattccccagcaggcgagaggtagaggcaggaggatagagtttg 120
|||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 261 ttgtggttcaggcctgcattccccagcaggtgagaggtggaggcaggaggatagagtttg 320
Query: 121 aagacgaactgatcaaaagtatgtaagggaggagaaggaaagagagggaagaagaccgct 180
||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagacgaactgatcaaaaggagggaagggaggagaaggaaagagagggaagaagaccgct 380
Query: 181 ttctactactgcccgaaatgtagagaaacaccaatttatttctaccctctaagctaatca 240
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 ttccactactgcccgaaatgtagagaaacaccaatttatttctatcctctaagctaatca 440
Query: 241 tgtgtagaaatgacaggtgctgcttaggcggggcccgcagggttttgtttcaccagtagc 300
|||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 441 tgtgtagaaatgacagatgctgcttagg-------------gttttgtttcaccagtagc 487
Query: 301 c------aac-------------------------gccaattcctccacaatgcccttcc 329
| ||| |||||||||||||||||||||||||
Sbjct: 488 ctgagccaactccactcttccagtctcagtccaatgccaattcctccacaatgcccttcc 547
Query: 330 tccgagcctcaatcacacagattccctctccttctcccaccccattctcgaagtacctat 389
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 548 tccgggcctcaatcacacagattccctctcct-ctcccaccccattctcgaagtacctat 606
Query: 390 caca 393
||||
Sbjct: 607 caca 610
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 793
Length adjustment: 9
Effective length of query: 384
Effective length of database: 784
Effective search space: 301056
Effective search space used: 301056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no335_f14.g1 MSMg01no335_f14.g1 CHROMAT_FILE:
MSMg01no335_f14.g1 PHD_FILE: MSMg01no335_f14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:05 2005
(508 letters)
>mm_chr5_66695657_66696565
Length = 909
Score = 880 bits (455), Expect = 0.0
Identities = 497/513 (96%), Gaps = 6/513 (1%)
Strand = Plus / Minus
Query: 1 tggctgtggatctgggagtctatgcctgggtgtcaaggagcaggcctgagggg-gagaag 59
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 538 tggctgtggatctgggagcctatgcctgggtgtcaaggagcaggcctgaggggagagaag 479
Query: 60 cagggagcacaggcgctggggtgagtctgggaaccaggtggagaccgttaggtgggagga 119
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 478 cagggagcacaggcgctggggtgagccagggaaccaggtggagaccgttaggtgggagga 419
Query: 120 agggctacaggagataaacaagtgctgtttcaatcaagcaaaaacctagatattttacag 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 agggctacaggagataaacaagtgctgtttcaatcaagcaaaaacctagatattttacag 359
Query: 180 aattgaaatggagcataacagatggtttgggcctaatttgaatggctttcactcgtaatt 239
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 358 aattgaaatggagcataacagatggtttgggcctaaaatgaatggctttcactcgtaatt 299
Query: 240 atacattttaaatgctaatgacagttagctaattagttttaccagcggctacagttttgt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 atacattttaaatgctaatgacagttagctaattagttttaccagcggctacagttttgt 239
Query: 300 ttttccaaactcccggactcatttttctgcttggaaacattt----aaaaaaaaaattaa 355
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 238 ttttccaaactcccggactcatttttctgcttggaaacatttttaaaaaaaaaaaattaa 179
Query: 356 taaaaaaatgttattaatgtaaccagctggagtggctccagcagtgtggtaccaggcact 415
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 taaaaaaatgttattaatgcaaccagctggagtggctccagcagtgtggtaccaggcact 119
Query: 416 tggatacaatccaggccccccccccactctgaatcctgctctcccagtgcagccccttct 475
||| |||||||||||||||||| | ||||||||||| |||||||||||||||||||||||
Sbjct: 118 tgggtacaatccaggcccccccac-actctgaatccagctctcccagtgcagccccttct 60
Query: 476 tcatgcagattcatgctgctctctgtcctgagc 508
|||||||||||||||| ||||||||||||||||
Sbjct: 59 tcatgcagattcatgccgctctctgtcctgagc 27
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 909
Length adjustment: 10
Effective length of query: 498
Effective length of database: 899
Effective search space: 447702
Effective search space used: 447702
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
