BAC Information

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BAC

Clone NameMSMg01-335F15
Chromosome5 (Build37)
Map Location 12,395,879 - 12,396,401
singlet/doubletsinglet
Overlap geneSema3d
Upstream geneLOC667961, EG667967, LOC100042858, LOC667974, EG667986, EG623898, EG668001, LOC668008, EG668011, LOC668017, EG668021, LOC623998, EG668043, LOC545732, LOC384144, LOC100041626, EG668059
Downstream geneLOC668015, LOC100042917, LOC668069, LOC433845, LOC625989, LOC670717
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-335F15.T7 (MSMg01no335_f15.b1)MSMg01-335F15.TJ (MSMg01no335_f15.g1)
ACCAG450627AG450628
length716733
length of high quality
(start - end)
523 (169 - 691)426 (220 - 645)
definitionCHROMAT_FILE: MSMg01no335_f15.b1 PHD_FILE: MSMg01no335_f15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:05 2005CHROMAT_FILE: MSMg01no335_f15.g1 PHD_FILE: MSMg01no335_f15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTCGCTATACGACTCCTATAGTGCGAGGATCCGCGGAATTCATCCACTGT
TGCGACTACTACTTCTGTGCATCTTCTTGTCTGGCATTGTTCTTGGGACC
TTTTCTTAAGGGGCCTTACTATTAAAGCATTCCAAAGTATCCTATTTTAG
TACACTTCATAAGAAAGTGAAGGGGAAACAAAATGATCTAATTCACTGCT
CACTTACTTGAGAAACTGGAAATAATCCCAGAATCAAACAGTCTCATGCC
CAGACACAAGATCATTTCTAGACCACACACCAGTGCAGAACTACCCCTAC
TTGAGCTGTCTGCCTATGAATGGAGTACTCGAAGCGTTCTTTTTTTACTA
TATATTTAGGGAACTCTATTGGAAGTCTCAATGCTTCCTTTATGGAATCA
AGTTACCTAAGGAAAGTTAAGTCCTCATCTGCCAAGAAGCAGTATCAGAG
AGAGAGCTCAAAGATAAATCCCTCTAGATTTGTAAAGACTTTAGTAGGAA
AAGCAGGTTGTTATCCTATGTTGTATCATTTGTTTAGCAATTCTCTGGTA
TAAAACTAAACAGAATTGGCAATTATGTTAATCAGTGATATTATCCAAAA
ATTAAAATTCAAGGTCATGTGAGCTTCTAAACAAGTGGATCTGAAACTAA
ATAATGGTCTGAATGGTTATGGGAAAATACCTTTGAGTGCCTTTCTTTAT
GCTGTTACCAGCTAGG
CATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATGANATTCTTAGGCAAATGGATGGAACT
AGAAATATTATCCTGAGTGAGGTAACCTAATCACAAAAGAGACACATGGT
ATACCCTTCACTGAAATGTGGATATTAGACCAGAAACTTGGAATACCAAG
ATACAATTCAAAGACCACATGAAGCTCCAGAAGAGGGAAGACCAAAGTTT
AAATAGTTCAGTCCTTCTTAGAAGGGAGAACAAAATACCCATGGAAGGAG
TAACAGAGACAAAGGCTCTGTGGAGCAGAGGCTGAAGGAAAGGCCATCCA
GAGACTGCTCCACCTGGGAATCCATCCTGCATACAGTCACCAAATCCAGA
CACTATTGTGAATGCCAACAAGACCTTGCTGATAGGAACCTGATATAGCT
GTCTTCTAAGAGGCTCTACCAGTGCCTGACAAATTCAGAGGTGGATGCTT
TCAGTCAAGCATTGTACTGAGCACAGGGAGGATCTAGAGAAAGGACCCAA
GGAGCTGAAGGGGTTTGCAGTCCCAAAGGAGGAACAACAATATGAAACAA
CCAGTACCCCCAGAGCTCCCAGAGACCAAACCACCAAACAAAGAATTCTT
CACTTTTTTTCATTGATGAGTCTATGTTTATATTTCGCTGGTATAAATAT
CATTGCTTTATTTAATTTTGAAAATAAGATTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no335_f15.b1 MSMg01no335_f15.b1 CHROMAT_FILE:
MSMg01no335_f15.b1 PHD_FILE: MSMg01no335_f15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:05 2005
         (523 letters)



>mm_chr5_12395679_12396601
          Length = 923

 Score =  957 bits (495), Expect = 0.0
 Identities = 516/523 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaaggggaaacaaaatgatctaattcactgctcacttacttgagaaactggaaataatcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaaggggaaacaaaatgatctaattcactgctcacttacttgagaaactggaaataatcc 260

                                                                       
Query: 61  cagaatcaaacagtctcatgcccagacacaagatcatttctagaccacacaccagtgcag 120
           ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 261 cagaatcaaacagtctcatgctcagacacaagatcatttctagaccacacaccagtgcgg 320

                                                                       
Query: 121 aactacccctacttgagctgtctgcctatgaatggagtactcgaagcgttctttttttac 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 321 aactacccctacttgagctgtctgcctatgaatggagtactcgtagcgttcttttttaac 380

                                                                       
Query: 181 tatatatttagggaactctattggaagtctcaatgcttcctttatggaatcaagttacct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatatatttagggaactctattggaagtctcaatgcttcctttatggaatcaagttacct 440

                                                                       
Query: 241 aaggaaagttaagtcctcatctgccaagaagcagtatcagagagagagctcaaagataaa 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 aaggaaagttaagtcctcatctgccaagaagcagtatcagagagagagctcagagataaa 500

                                                                       
Query: 301 tccctctagatttgtaaagactttagtaggaaaagcaggttgttatcctatgttgtatca 360
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 501 tccctctagatttgtaaagactttagtaggaaaagcacgttgttatcctatgttgtatca 560

                                                                       
Query: 361 tttgtttagcaattctctggtataaaactaaacagaattggcaattatgttaatcagtga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttgtttagcaattctctggtataaaactaaacagaattggcaattatgttaatcagtga 620

                                                                       
Query: 421 tattatccaaaaattaaaattcaaggtcatgtgagcttctaaacaagtggatctgaaact 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 621 tattatccaaaaattaaaattcaaggtcatgtgagcttctaaacaagtggatgtgaaact 680

                                                      
Query: 481 aaataatggtctgaatggttatgggaaaatacctttgagtgcc 523
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaataatggtctgaatggttatgggaaaatacctttgagtgcc 723


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space:   468369
Effective search space used:   468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)