BAC Information

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BAC

Clone NameMSMg01-335M19
Chromosome5 (Build37)
Map Location 24,821,049 - 24,821,297
singlet/doubletsinglet
Overlap geneMll3
Upstream geneKcnh2, Nos3, Atg9b, Abcb8, Accn3, Cdk5, Slc4a2, Fastk, Tmub1, Centg3, Gbx1, Asb10, 4931409K22Rik, Abcf2, LOC100042348, Smarcd3, 1700022A21Rik, Nub1, 2810046M22Rik, Crygn, Rheb, Prkag2, Galntl5, E130116L18Rik, Galnt11
Downstream geneGm443, Xrcc2, LOC435835, Actr3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-335M19.T7 (MSMg01no335_m19.b1)MSMg01-335M19.TJ (MSMg01no335_m19.g1)
ACCAG450971AG450972
length734787
length of high quality
(start - end)
249 (60 - 308)250 (74 - 323)
definitionCHROMAT_FILE: MSMg01no335_m19.b1 PHD_FILE: MSMg01no335_m19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:41 2005CHROMAT_FILE: MSMg01no335_m19.g1 PHD_FILE: MSMg01no335_m19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGCTATACGACTCCTATAGGTTTCGGATACGCGGAATTCTCAGCCACCT
TTCTCACAGATGTTCTCACCTGGATCATCCCATTCCAGACCACCATCTCC
AGTGGATCCTTATGCAAAAATGGTTGGTACTCCTAGACCACCTCCTGGTG
GACATAGTTTTCCAAGAAGAAATTCTGTTACACCAGTGGAAAACTGTGTG
CCTTTATCTTCAGTACCTAGGCCCATTCATATGAATGAAACATCAGCCAC
AAGGCCATCCCCAGCCAGAGACTTATGTGCTTCCTCCATGACAAACAGTG
ACCCCTATGTTTTGCCTCCAGATACACCTAGGCCCATGATGACAGATCAG
TTTTCAAAACCTTTTAGCCTGCCTAGGTCCCCTGTGATTTCTGAACAAAG
TACAAAAGGTCCTCTAACAACTGGAACCAGTGATCACTTTACTAAACCAT
CTCCTATGAAAGATGCCTTTCATAGGTAACGGCTACCTGATCCCCATGCA
TGACCGTCTTTGACACCTGCCCCATTGTTTATTGCCCCTTTTTAATACTC
CACTGCACCCTCCTCTCTCTCACGATTCTTATGGATCTGTGTCTCATACA
TCTAGACCACTCTCTGGTTGACTCTCTATTAAACGCCTGTCTTTGTCTTT
CATTGCCCTCATAACTTTTTTTCCCCATAGTCTGCCATAATGATCCTTTT
TTCCCTTCCTTCTTTTTATTTTCTTCCCCCTCCA
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTAGGAACTTTTCAGAGGCTACATGAAG
GTAGAGCCCTGAGAGGCATGGCATGGGTGGCTGTTGGTCATCTGGGGAGG
TTGGTTGCAGTTTGTTAGTAGCCATGGTCAAAGAAGAAACAAAAGGAAAG
AAATCAGGATTGGGGATTTCTCCCTCTCCTGCCCTCCCCCTTTTTCCTCC
TCCCCCCTCTCCCCTCCCCCCCCATCCTTCTTTTTCTCCTATCTAGTGTT
GGGGGTAAAACTGAGAGGATATATTTTGTTGAACAAAGAACCCACAAAGT
AGCAAAGACCAGTTACAAGTGGCACCCCAACATGGAGCTTGATAAAAAAA
ATGGGAAATTTGACTTTAAATGCCATAGAGGAAATGGCAGGGGATTAATT
AATAGATATTTTTTTCAAGATGCCAGCAAAAAATTTATTGCTGCTTGCGG
TAGTTTGACTATGCTTGGCTCATGTAAAGTGGCACTGTTAGGAGTTGCGG
TCTTTGCTGCATTATTTTGTTACCTTGTTGTATTAAGTGTGTTCACTGCT
CGCGTTGTATTTCTGAACGTTTCGTTTTATTGCGCCAAGTATTTTCTCCC
TTATTCTGCTAGAAGATATTTCTTTTTCCTTTTATGTCTCCCGCTCCACC
ACGGATTCTAATTTCTTCTTTTTCTTCCCTCCCTTTCCGCCCGTCCCTGT
CCCGTTATTATCTGTTTTTTGTTTTTCTCTGCTCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no335_m19.b1 MSMg01no335_m19.b1 CHROMAT_FILE:
MSMg01no335_m19.b1 PHD_FILE: MSMg01no335_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:41 2005
         (249 letters)



>mm_chr5_24820849_24821497
          Length = 649

 Score =  482 bits (249), Expect = e-140
 Identities = 249/249 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgttctcacctggatcatcccattccagaccaccatctccagtggatccttatgcaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 atgttctcacctggatcatcccattccagaccaccatctccagtggatccttatgcaaaa 390

                                                                       
Query: 61  atggttggtactcctagaccacctcctggtggacatagttttccaagaagaaattctgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 atggttggtactcctagaccacctcctggtggacatagttttccaagaagaaattctgtt 330

                                                                       
Query: 121 acaccagtggaaaactgtgtgcctttatcttcagtacctaggcccattcatatgaatgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 acaccagtggaaaactgtgtgcctttatcttcagtacctaggcccattcatatgaatgaa 270

                                                                       
Query: 181 acatcagccacaaggccatccccagccagagacttatgtgcttcctccatgacaaacagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 acatcagccacaaggccatccccagccagagacttatgtgcttcctccatgacaaacagt 210

                    
Query: 241 gacccctat 249
           |||||||||
Sbjct: 209 gacccctat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)