Query= MSMg01no335_m20.b1 MSMg01no335_m20.b1 CHROMAT_FILE:
MSMg01no335_m20.b1 PHD_FILE: MSMg01no335_m20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:41 2005
(541 letters)
>mm_chr5_64945443_64946382
Length = 940
Score = 675 bits (349), Expect = 0.0
Identities = 352/353 (99%), Gaps = 1/353 (0%)
Strand = Plus / Minus
Query: 189 agggagacaaggttggagcatcccacaaacacatatatttcaggggaagagcaagacatt 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 940 agggagacaaggttggagcatcccacaaacacatatatttcaggggaagagcaagacatt 881
Query: 249 ggatgaagtagctgagaatctgagactggtgcaaatgctgtggagaaaacagtagagaac 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880 ggatgaagtagctgagaatctgagactggtgcaaatgctgtggagaaaacagtagagaac 821
Query: 309 tgatggagggctcagaggccaagtggctgctttagattgggcaagtagcaatgtctaaca 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 tgatggagggctcagaggccaagtggctgctttagattgggcaagtagcaatgtctaaca 761
Query: 369 gaagtgacctttgagttgaggttagcttggaaaaatgatccagacacacagggtgtgagg 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 gaagtgacctttgagttgaggttagcttggaaaaatgatccagacacacagggtgtgagg 701
Query: 429 gcttgcccacagctaaaggtgccaaagtcacaggggtgggtgttacaaggcagcagggtc 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 gcttgcccacagctaaaggtgccaaagtcacaggggtgggtgttacaaggcagcagggtc 641
Query: 489 acaggaaaaacatcgaagaaggtagaggacagagaggagggcccaagtcagcc 541
||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 acagg-aaaacatcgaagaaggtagaggacagagaggagggcccaagtcagcc 589
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 940
Length adjustment: 10
Effective length of query: 531
Effective length of database: 930
Effective search space: 493830
Effective search space used: 493830
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no335_m20.g1 MSMg01no335_m20.g1 CHROMAT_FILE:
MSMg01no335_m20.g1 PHD_FILE: MSMg01no335_m20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:41 2005
(551 letters)
>mm_chr5_64779720_64780670
Length = 951
Score = 1050 bits (543), Expect = 0.0
Identities = 549/551 (99%)
Strand = Plus / Plus
Query: 1 ttacactgctcagaggctctctctgccacagctctaaatctgagccatctctcaactcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttacactgctcagaggctctctctgccacagctctaaatctgagccatctctcaactcat 260
Query: 61 ctcaagccatctcaggcaatcctctgtctccacttctctatcccaagccctcgcaaatct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcaagccatctcaggcaatcctctgtctccacttctctatcccaagccctcgcaaatct 320
Query: 121 aagtgtcccggtccatctccttttgcccaaccattgactgctagcatctttattgatcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagtgtcccggtccatctccttttgcccaaccattgactgctagcatctttattgatcaa 380
Query: 181 tcaaaaaccaattggggacaaggtccttcagcatttggacacacagattcctgattaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaaaaaccaattggggacaaggtccttcagcatttggacacacagattcctgattaaat 440
Query: 241 caaagcattataaccaatcctcaatacatcagtccagacacaggttcagagatcctgtct 300
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 caaagcattagaaccaatcctcaatacatcagtccagacacaggttcagagaccctgtct 500
Query: 301 aggaggaataaaaaggagagtaatgggacaagatcccaggtgtccttatctgacttctgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggaggaataaaaaggagagtaatgggacaagatcccaggtgtccttatctgacttctgc 560
Query: 361 ctacatgcatagatagacatgtacacatgaacatacatgtgcacatacacgacacacaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctacatgcatagatagacatgtacacatgaacatacatgtgcacatacacgacacacaga 620
Query: 421 tacaaaagccatgtttttctttagtctcaaaaaaccctgaaaaatcccagaggctgcaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tacaaaagccatgtttttctttagtctcaaaaaaccctgaaaaatcccagaggctgcaag 680
Query: 481 ttgctcctgcttgaaatccatggagatcactaaggcttctctgagtcagctaggagtctg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttgctcctgcttgaaatccatggagatcactaaggcttctctgagtcagctaggagtctg 740
Query: 541 aatgagctcag 551
|||||||||||
Sbjct: 741 aatgagctcag 751
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space: 509081
Effective search space used: 509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
