Query= MSMg01no335_n03.b1 MSMg01no335_n03.b1 CHROMAT_FILE:
MSMg01no335_n03.b1 PHD_FILE: MSMg01no335_n03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:42 2005
(556 letters)
>mm_chr5_20197291_20198247
Length = 957
Score = 893 bits (462), Expect = 0.0
Identities = 526/554 (94%), Gaps = 18/554 (3%)
Strand = Plus / Minus
Query: 17 gaattccccatttccc--tggctctttatcttttgctgatggttttgaggcaagtctcag 74
|||||||||| || | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 939 gaattcccca--tcacaatggctctttatcttttgctgatggttttgaggcaagtctcag 882
Query: 75 gaaacttgctctggccttagccttgccaccgaactgaagatgaccttgaactctt-atcc 133
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||
Sbjct: 881 gaaacttgctctggccttagtcttgccacagaactgaagatgaccttgaactcttgatcc 822
Query: 134 tcctgcccctgcctctcaagtgccaggat--------tacaggtgtgtattaccgagcct 185
||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 821 tcctgcccctgcctctcaagtgccaggattacaggaatacaggtgtgtattactaagcct 762
Query: 186 ggctgcgattatataattttatgtggcttaaaaaaatacctcagctatatgcaaaagggt 245
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 761 ggctgcgattatataattttatgtggcttaaaaaaatacctcagctatgtgcaaaagggt 702
Query: 246 ccatttttgtgtgtgtacgaattacgtttc--tttttttttttttaaataggaaaaataa 303
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 701 ccatttttgtgtatgtacgaattacgtttctttttttttttttttaaataggaaaaataa 642
Query: 304 tagtgctgaggccttgtatgcagccaggtggataatggctaactatccatccaggtcaga 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 tagtgctgaggccttgtatgcagccaggtggataatggctaactatccatccaggtcaga 582
Query: 364 ctctctgccggtattccctccactatttggctcagtaactgccttccatggttggccctg 423
||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 581 ctctctgcccgtattccctccactatttggctcagtaactgcctt-cacggttggccctg 523
Query: 424 agaggcttcagccaatgaaactggtgataaattcctagtttacagagtta-gaagaacct 482
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 522 agaggcttcagccaatgaaactggtgataaattcctagtttacagag-taggaagaacct 464
Query: 483 gaatcaaaggggcttgacctcagtctttagaaggtacttttaatctcaaggcctcccagg 542
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 463 gaatcaaaggggcttgacctcagtctttagaaggtacttttaatctcaaagcctcccagg 404
Query: 543 catcatggtcttca 556
||||||||||||||
Sbjct: 403 catcatggtcttca 390
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 957
Length adjustment: 10
Effective length of query: 546
Effective length of database: 947
Effective search space: 517062
Effective search space used: 517062
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no335_n03.g1 MSMg01no335_n03.g1 CHROMAT_FILE:
MSMg01no335_n03.g1 PHD_FILE: MSMg01no335_n03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:42 2005
(555 letters)
>mm_chr5_20005691_20006645
Length = 955
Score = 1019 bits (527), Expect = 0.0
Identities = 548/555 (98%)
Strand = Plus / Plus
Query: 1 tcataagaagacatgaaatccattttgtgttggccaactactgccaagcatgggccctcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcataagaagacatgaaatccattttgtgttggccaactactgccaagcatgggccctcc 260
Query: 61 tccactctggtcccacactagctaactaaactctggttatttcgactgaaacatacagat 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 tccactctggtcccacactagctacctaaactctggttatttcgactgaaacatacagat 320
Query: 121 caaaggttaaaggttacgtttctgcacataggatttcagggccagccactctctgctaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaaggttaaaggttacgtttctgcacataggatttcagggccagccactctctgctaga 380
Query: 181 cacttaatcctccctgggcaaggccaatcctccttacctcaggagtcactggttgttctc 240
|||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 cactgaatcctccctggacaaggccaatcctccttacctcaggagtcaccggttgttctc 440
Query: 241 catgtaggcacgggtctccatgattgctttctccctgcacattaatgtgtcccttaaaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catgtaggcacgggtctccatgattgctttctccctgcacattaatgtgtcccttaaaat 500
Query: 301 tccacttagatttaactagttagtgacataggtggaaatctgaaagatccattggtataa 360
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 cccacttagatttaactagttagtgacataggtggaaatctgaatgatccattggtataa 560
Query: 361 gtttttctttttatgtgacatgaagatgatgggaaatttctcagaaataagataacaact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtttttctttttatgtgacatgaagatgatgggaaatttctcagaaataagataacaact 620
Query: 421 tagttgaactcagctgagagatgattgggggactcactaaatgttcatttttaatggaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagttgaactcagctgagagatgattgggggactcactaaatgttcatttttaatggaaa 680
Query: 481 agtgggtgtcacaagagcattgaacattttacagtgttcaacactaaagctgagacaaag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agtgggtgtcacaagagcattgaacattttacagtgttcaacactaaagctgagacaaag 740
Query: 541 catggcacactttag 555
||| |||||||||||
Sbjct: 741 catagcacactttag 755
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space: 515025
Effective search space used: 515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
