Query= MSMg01no335_n12.b1 MSMg01no335_n12.b1 CHROMAT_FILE:
MSMg01no335_n12.b1 PHD_FILE: MSMg01no335_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:44 2005
(498 letters)
>mm_chr5_108982225_108983122
Length = 898
Score = 924 bits (478), Expect = 0.0
Identities = 493/498 (98%)
Strand = Plus / Minus
Query: 1 gattctctacccgaaatcccctccacctataaccctacccgctgcccagccagataagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 gattctctacccgaaatcccctccacctataaccctacccgctgcccagccagataagca 639
Query: 61 actgcaattctccatcttgtgtctcacgtgttgctcttttaagtaatcacgggacccagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 actgcaattctccatcttgtgtctcacgtgttgctcttttaagtaatcacgggacccagc 579
Query: 121 atgaaatgtattcacagatggtgcacccaccctaggtctgcattattcagggcgctgaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 atgaaatgtattcacagatggtgcacccaccctaggtctgcattattcagggcgctgaat 519
Query: 181 tattaattttctttgaagttcctggaccaatgccttgaagaagatcagtcagttgacaga 240
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 518 tattaattttctttgaagttcctggaccaatgccttgaagaagatcaatcagttgacaaa 459
Query: 241 gatacctctgtagtcccctgccggtaggccccacaccagaactgaaaactccaagaaccc 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 gatacccctgtagtcccctgccggtaggccccacaccagaactgaaaactccaagaaccc 399
Query: 301 taaaagttcttctgggatcctttctggacccagagcagggagggcacctgcctctcagaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 taaaagttcttctgggatcctttctggacccagagcagggagggcacctgcctctcagaa 339
Query: 361 cctggataggcagatggatagcctccttagaaggggctttgtagagatttccagagagac 420
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 338 cctgcataggcagatggatagcctccttagaaggggctttgtaaagatttccagagagac 279
Query: 421 cagagtgggactagaacagagcagcctgtccttaccatcctctggagcaacctacattgc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 cagagtgggactagaacagagcagcctgtccttaccatcctctggagcaacctacattgc 219
Query: 481 ccaggaatcaaagtggag 498
||||||||||||||||||
Sbjct: 218 ccaggaatcaaagtggag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space: 433344
Effective search space used: 433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no335_n12.g1 MSMg01no335_n12.g1 CHROMAT_FILE:
MSMg01no335_n12.g1 PHD_FILE: MSMg01no335_n12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:44 2005
(405 letters)
>mm_chr5_108793129_108793933
Length = 805
Score = 710 bits (367), Expect = 0.0
Identities = 399/417 (95%), Gaps = 14/417 (3%)
Strand = Plus / Plus
Query: 1 gaacaccaaatcttgaaacattcatgtaattcatttgtcttgagaggtgtaagggaaagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 gaacaccaaatcttgaaacattcatgtaattcatttgtcttgagaggtgtaagggaaagc 250
Query: 61 cctcacctcccacaccccaggttccccttgttgccctgaactgacaatatacacaaatgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 cctcacctcccacaccccaggttccccttgttgccctgaactgacaatatacacaaatgt 310
Query: 121 cacaatgccttccctggtatctgggtttgtccacccaagtcctctctacaaaacttctgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 cacaatgccttccctggtatctgggtttgtccacccaagtcctctctacaaaacttctgt 370
Query: 181 tcaaaaaacaaaa----------cacctaaaatgtagagagactactgaccttaatagac 230
||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 371 tcaaaaaacaaaagaaaacaaaacacctaaaatgtagagagactactgaccttaatagac 430
Query: 231 aatttaaaagactcatgaggcatttaaggtttagagctatgtgaaatgtgcatgactaaa 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 aatttaaaagactcatgaggcatttaaggtttagagctatgtgaaatgtgcatgactaaa 490
Query: 291 tgtctcaggggtgggggaccaaaggaccaatttggatcttggtgcatctatgcaacccat 350
|||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 491 tgtctcgggggtgggggaccaaaggaccagtttggatcttgatgcatctatgcaacccat 550
Query: 351 agacccactcaacctaggctgctcttgtg--aatccacaggcttttgagtggaccca 405
|||||||||| |||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 551 agacccactccacctaggctgct--tgtgggaatccacaggcttttgagtggaccca 605
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 805
Length adjustment: 9
Effective length of query: 396
Effective length of database: 796
Effective search space: 315216
Effective search space used: 315216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
