BAC Information

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BAC

Clone NameMSMg01-335O09
Chromosome5 (Build37)
Map Location 31,177,045 - 31,177,427
singlet/doubletsinglet
Overlap gene1110039B18Rik
Upstream geneLOC100039369, Il6, Tyms, EG242914, Gm444, Hadha, Hadhb, Gpr113, EG384325, D5Wsu178e, Gm1060, Otof, 1700001C02Rik, 1700041E20Rik, Kcnk3, 4930471M23Rik, Cenpa, Dpysl5, Mapre3
Downstream gene9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr, Zfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000, Bre
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-335O09.T7 (MSMg01no335_o09.b1)MSMg01-335O09.TJ (MSMg01no335_o09.g1)
ACCAG451046AG451047
length865726
length of high quality
(start - end)		---383 (78 - 460)
definitionCHROMAT_FILE: MSMg01no335_o09.b1 PHD_FILE: MSMg01no335_o09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:49 2005CHROMAT_FILE: MSMg01no335_o09.g1 PHD_FILE: MSMg01no335_o09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTGTGGCCGCAAACGACTCATATATTTCCAGGACACGCGGAAATCCCTCA
ATATGCCGCCAGAGGTGTGTCTTCTCGGTCCACCAAATCCAGTTGACAGG
AGACTAGTCACCTCATACACCTCCAAGTTAGAATTTCTCCACAATACTCA
CAACACTAATCCCTACAAAACACATTAAGCGCCCCCTGCGCCTACCTGTA
TATCTTATTACCGAGTATCCTCCATCCTTTGTAACTATTTTTATCTTTGG
CCACGATTGAATTATTAAATCTCCATCCTATTGTTTCTAAGTTATCCACA
TATTTATGATATACTTTTTTTAACACATATTACTACTATAATACTTAACA
GACCTCTAGCAGCGAAAAGGTTTATAATCCGCGAGATACCACATTACCCC
CCACATTTATTTTGCGAACTACCATACTTGTAGACACCAGATATAGACCT
GATTCTTCACGCAGAAATACATGGCAAACCCCCCCTATTGTTATACACAA
GTTAACTCCCATAGATGTCCCACTATCCCACCTGGAATAGCTTAACCCAG
CGCAATCAATAGCAATCTACCAACGTACTGCTCATTGTTATGCCCAACGG
CCTCCGTTTGATATTTAGCAGAGGTTGATATCTTCCCATTAAATGCTGCT
CTACCTATCTATGACTCGACTTGTCATGCTCATACTCCCACCTATATAAC
AGTACTCACTCCTACAACCCCCAATCACCGCCCTCAACCGTCCTTTATTA
TCTTAAATCTCATACTTGCTTTCATCTCATCCCCGCTTCGCCTGCTTTAC
ACGTCTATCTTCCACTCCTCTTCCGCCACTTCCCCCATACACTAATTCTT
TTCTCCTCCCCCCTN

TGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATCAGAACAAGGGTGGTCTGGAG
ATGCTACACATAGCTCTGTGTCCCCCATCGTGTCCTCTTCCCAGACGACA
AACCACTACTTACCCTGCAAAGAGCTGTTTGACCGCAAGTCATGACATAG
GAATCCTACTGCAAAGACCAGAAGCAGCAGGAATAGCCGGGCCCAGGGTG
GCCGAGGACCCCGTGCCCGTTGCAACAAGCCCTGGCGAGACAGAGAACAC
AGTGTTCAGAAGGGGAAGGGCTGGTCCTTGCTTCCCATTGTAAGCCCCAA
GCGAGGCCTGCATATGAGCTGGAGGTCATGGGGGATCCACAGATGGGGGA
GGCAGAGACGTGACCCAATCTAACCCAGGGTGTGTTACACACATGGAGGT
CTTCGGGTGGGCTGGAAGTTGGGCGTCACACCTTGCAGGCTGTGTCACAG
GTGAGAACATGCTCACTGCCACCACTGCCCTTCTTCCGAAGCTCTTGGTT
GGCAATCTTCTAGGATTGTATGTTCCCTTGTATAGATCTCCGTGCCTACC
GAATACCAACTATCTGAGTTTTATAGCTGACCCCTGCTTATGACTATTAA
TTTTGAGCCCTCATCTCGCTTCACATTCTTCGCCACAGTCCCCCTCCCAG
TCATTCTTTTTTTTTTACCCCCCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no335_o09.g1 MSMg01no335_o09.g1 CHROMAT_FILE:
MSMg01no335_o09.g1 PHD_FILE: MSMg01no335_o09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:49 2005
         (383 letters)



>mm_chr5_31176845_31177627
          Length = 783

 Score =  725 bits (375), Expect = 0.0
 Identities = 381/383 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcagaacaagggtggtctggagatgctacacatagctctgtgtcccccatcgtgtcctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 atcagaacaagggtggtctggagatgctacacatagctctgtgtcccccatcgtgtcctc 524

                                                                       
Query: 61  ttcccagacgacaaaccactacttaccctgcaaagagctgtttgaccgcaagtcatgaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 ttcccagacgacaaaccactacttaccctgcaaagagctgtttgaccgcaagtcatgaca 464

                                                                       
Query: 121 taggaatcctactgcaaagaccagaagcagcaggaatagccgggcccagggtggccgagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 taggaatcctactgcaaagaccagaagcagcaggaatagccgggcccagggtggccgagg 404

                                                                       
Query: 181 accccgtgcccgttgcaacaagccctggcgagacagagaacacagtgttcagaaggggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 accccgtgcccgttgcaacaagccctggcgagacagagaacacagtgttcagaaggggaa 344

                                                                       
Query: 241 gggctggtccttgcttcccattgtaagccccaagcgaggcctgcatatgagctggaggtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 gggctggtccttgcttcccattgtaagccccaagcgaggcctgcatatgagctggaggtc 284

                                                                       
Query: 301 atgggggatccacagatgggggaggcagagacgtgacccaatctaacccagggtgtgtta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 atgggggatccacagatgggggaggcagagacgtgacccaatctaacccagggtgtgtta 224

                                  
Query: 361 cacacatggaggtcttcgggtgg 383
            ||||||||||| ||||||||||
Sbjct: 223 gacacatggaggccttcgggtgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 783
Length adjustment: 9
Effective length of query: 374
Effective length of database: 774
Effective search space:   289476
Effective search space used:   289476
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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