Query= MSMg01no335_p01.b1 MSMg01no335_p01.b1 CHROMAT_FILE:
MSMg01no335_p01.b1 PHD_FILE: MSMg01no335_p01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:52 2005
(272 letters)
>mm_chr5_34215833_34216506
Length = 674
Score = 499 bits (258), Expect = e-146
Identities = 267/270 (98%), Gaps = 2/270 (0%)
Strand = Plus / Plus
Query: 5 ggaattccttcatttcctataaaaatgtcaaaaaaa-gcaatgctacctccagcct-agg 62
||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 205 ggaattccttcattttctataaaaatgtcaaaaaaaagcaatgctacctccagccttagg 264
Query: 63 tcttttgaactgcccactgttgagatgagtttttcttttgccatacaaagttattatcat 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcttttgaactgcccactgttgagatgagtttttcttttgccatacaaagttattatcat 324
Query: 123 atgattctatttggcttccttcaaactattgtttgtatactatatttgcttggcaagggg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgattctatttggcttccttcaaactattgtttgtatactatatttgcttggcaagggg 384
Query: 183 aggtagctttctgtataagactctgattctaaagagatgaagacttgtgtgaatgtacaa 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aggtagctttctgtataagactctgattctaaagagatgaagacttgtgtgaatgtacaa 444
Query: 243 aggtttgcattgtagctgttagaacagcac 272
||||||||||||||||||||||||||||||
Sbjct: 445 aggtttgcattgtagctgttagaacagcac 474
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 674
Length adjustment: 9
Effective length of query: 263
Effective length of database: 665
Effective search space: 174895
Effective search space used: 174895
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no335_p01.g1 MSMg01no335_p01.g1 CHROMAT_FILE:
MSMg01no335_p01.g1 PHD_FILE: MSMg01no335_p01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:52 2005
(465 letters)
>mm_chr5_34407560_34408424
Length = 865
Score = 700 bits (362), Expect = 0.0
Identities = 374/378 (98%)
Strand = Plus / Minus
Query: 88 taaaaccttagttttaaaggaaagtacctatcaccttagagtaaaaggaggaacaaaagt 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 taaaaccttagttttaaaggaaagtacctatcaccttagagtaaaaggaggaacaaaagt 640
Query: 148 gttccaaccaaatgggattctagaaagtgatgagctcattaaagaaaatagcccattgtg 207
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 639 gttccaaccaaatgggattctagaaagtgatgagctctttaaagaaaatagcccattgtg 580
Query: 208 agtgactctaatccctagaggagggaagagacaccacctaaatttgtaattaacttgtag 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 agtgactctaatccctagaggagggaagagacaccacctaaatttgtaattaacttgtag 520
Query: 268 tctagcaaggcatactaaagctcaaaagagttcccttacataacacattcttcattaggt 327
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 519 tctagcaaggcatactaaagctcaaaagagctcccttacataacacattcttcattaggt 460
Query: 328 ctcctatgagtctgtgagtgtctgggaatagacatcaaggctgaaggcagactgacaact 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ctcctatgagtctgtgagtgtctgggaatagacatcaaggctgaaggcagactgacaact 400
Query: 388 atgggaaatcaacaggaggcattccattttataatgtatataacattatatatattatat 447
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 399 atgggaaatcaacagaaggcattccattttataatgtatataaaattatatatattatat 340
Query: 448 ataattatgtatatatgt 465
||||||||||||||||||
Sbjct: 339 ataattatgtatatatgt 322
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space: 389025
Effective search space used: 389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
