Query= MSMg01no335_p09.b1 MSMg01no335_p09.b1 CHROMAT_FILE:
MSMg01no335_p09.b1 PHD_FILE: MSMg01no335_p09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:54 2005
(456 letters)
>mm_chr5_53197600_53198455
Length = 856
Score = 855 bits (442), Expect = 0.0
Identities = 451/456 (98%), Gaps = 4/456 (0%)
Strand = Plus / Minus
Query: 1 aagggcagcctgtaacaaataaaacgtcatttctaaattagtaccagagacgggcccctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 aagggcagcctgtaacaaataaaacgtcatttctaaattagtaccagagacgggcccctt 546
Query: 61 tatcctattgggagaatgcattaagcctggtctcactggaaaacgtcaccaagccaccct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tatcctattgggagaatgcattaagcctggtctcactggaaaacgtcaccaagccaccct 486
Query: 121 gcgctgcagagtccctcagtgacatcctaagtctctcttagtcactcccatcagatttta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 gcgctgcagagtccctcagtgacatcctaagtctctcttagtcactcccatcagatttta 426
Query: 181 tcttcgggttccttgataagcaggtttttaaattgcaaattcaaataccatcactatcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tcttcgggttccttgataagcaggtttttaaattgcaaattcaaataccatcactatcag 366
Query: 241 acaactccacatttcaaatagttaaattaaaaaactaaatttagtaacccaaaaggagaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 acaactccacatttcaaatagttaaattaaaaaactaaatttagtaacccaaaaggagaa 306
Query: 301 agccgtcacccgtgaaaacaacctacacgttcagtccaacaaacaggggcagaggggtgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 agccgtcacccgtgaaaacaacctacacgttcagtccaacaaacaggggcagaggggtgg 246
Query: 361 tgctgatccctgaggacacaagggggaaccggctgtgggcttgccgagtgagtgagtgag 420
|||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 245 tgctgagccctgaggacacaagggggaaccggctgtgggcttgcc----gagtgagtgag 190
Query: 421 tgagtgtcttgtccactgccacaagctctgcttagt 456
||||||||||||||||||||||||||||||||||||
Sbjct: 189 tgagtgtcttgtccactgccacaagctctgcttagt 154
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space: 377316
Effective search space used: 377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no335_p09.g1 MSMg01no335_p09.g1 CHROMAT_FILE:
MSMg01no335_p09.g1 PHD_FILE: MSMg01no335_p09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:54 2005
(527 letters)
>mm_chr5_53070981_53071907
Length = 927
Score = 996 bits (515), Expect = 0.0
Identities = 524/527 (99%)
Strand = Plus / Plus
Query: 1 aaggccacattggtcttcatggtaggacagccagagccacacagagacacttgtctcaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggccacattggtcttcatggtaggacagccagagccacacagagacacttgtctcaaa 260
Query: 61 aacaaaacaaaaccacaaacaaaacagttactttttccttaaaaggatgggtgtgtttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacaaaacaaaaccacaaacaaaacagttactttttccttaaaaggatgggtgtgtttct 320
Query: 121 taggaattcttaatagaaaccaacaaatacaattgccttccctgagcaggtttttaagca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taggaattcttaatagaaaccaacaaatacaattgccttccctgagcaggtttttaagca 380
Query: 181 attttattatctgtgagggtgagagtgggaggtaatttgtgcagagtacatggtcggagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attttattatctgtgagggtgagagtgggaggtaatttgtgcagagtacatggtcggagg 440
Query: 241 acaactttgtgcaggcaattcccctcctacctttacgttggctctggggaccaaaccgag 300
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaactttgtgcaggcaatccccctcctacctttacgttggctctggggaccaaaccgag 500
Query: 301 gctaccggactatcctcagacagcacctttacccaacaagccatctcaccagctctaagc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctaccggactatcctcagacagcacctttacccaacaagccatctcaccagctctaagc 560
Query: 361 cgtttttaagttggttcctccaccccaccccccacctgaatcccagcactctgggaggct 420
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catttttaagttggttcctccaccccaccccccacctgaatcccagcactctgggaggct 620
Query: 421 gagaatcctacagattcaaggccagcttgtgcttcacactctgagaggacgtgaggtaag 480
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 621 gagaatcctacagattcaaggccagcttgtgcttcacactctgagaggacatgaggtaag 680
Query: 481 gtaaggaagctgtaggtcacaacgttacctttattgggcaaagtttg 527
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtaaggaagctgtaggtcacaacgttacctttattgggcaaagtttg 727
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space: 474089
Effective search space used: 474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
