Query= MSMg01no336_f23.b1 MSMg01no336_f23.b1 CHROMAT_FILE:
MSMg01no336_f23.b1 PHD_FILE: MSMg01no336_f23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:25 2005
(164 letters)
>mm_chr5_56859590_56860154
Length = 565
Score = 292 bits (151), Expect = 7e-84
Identities = 157/159 (98%), Gaps = 1/159 (0%)
Strand = Plus / Plus
Query: 5 gaattcattccttgacttaattctgctgt-aaattctagggacaataatgagactcgtag 63
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 205 gaattcattccttgacttaattctgctgtaaaattctagggacaataatgaaactcgtag 264
Query: 64 gtatgagagactatggcttctatgctttctatggcaatggataaacttctgttcacttaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtatgagagactatggcttctatgctttctatggcaatggataaacttctgttcacttaa 324
Query: 124 ttttagtttagaaaatttcttagttataacccatatctt 162
|||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttttagtttagaaaatttcttagttataacccatatctt 363
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 565
Length adjustment: 8
Effective length of query: 156
Effective length of database: 557
Effective search space: 86892
Effective search space used: 86892
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no336_f23.g1 MSMg01no336_f23.g1 CHROMAT_FILE:
MSMg01no336_f23.g1 PHD_FILE: MSMg01no336_f23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:25 2005
(523 letters)
>mm_chr5_56905854_56906780
Length = 927
Score = 977 bits (505), Expect = 0.0
Identities = 520/527 (98%), Gaps = 4/527 (0%)
Strand = Plus / Minus
Query: 1 cttattattagataagtttgcaggtatgtttaagtagaaagcaaactttttttatcatac 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 727 cttattattagataagtttgcaggtatgtttaagtagaaagcaaactttttctatcatac 668
Query: 61 aaatatggcatattatttaaaaattatgtcaaacttactctctccacactgcaagtggag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 aaatatggcatattatttaaaaattatgtcaaacttactctctccacactgcaagtggag 608
Query: 121 taacaaacctggagagtacatcacagattgttgaatatgttaatctgactcttgaaatct 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 taacaaacctagagagtacatcacagattgttgaatatgttaatctgactcttgaaatct 548
Query: 181 gctgctcattt----aaaaaaaaaaaagatccctttgaaaataatgttgctcactgacaa 236
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 gctgctcatttaaaaaaaaaaaaaaaagatccctttgaaaataatgttgctcactgacaa 488
Query: 237 tgtactattcaacaactccagtagagactactaagagattagtgttttcttgtctaccag 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tgtactattcaacaactccagtagagactactaagagattagtgttttcttgtctaccag 428
Query: 297 cacacctaccattctgcatcccattgatcagaagttgattttaattaaagtcttattatc 356
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 cacacctaccattctgcatcccattgatcagaagttgattttaattaaagtcttattatt 368
Query: 357 ctattttgtattttgacaaaaatacaataacactaccctaaagctaaattttataactag 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ctattttgtattttgacaaaaatacaataacactaccctaaagctaaattttataactag 308
Query: 417 agctgccaatagcaatgatgcctacaatggatcaagaccatgggaaatctgaacttccaa 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 agctgccaatagcaatgatgcctacaatggatcaagaccatgggaaatctgaacttccaa 248
Query: 477 taaactatttaccattcacataaccattaaaacatttatcattcgtt 523
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 taaactatttaccattcacataaccattaaaacatttatcattcgtt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 927
Length adjustment: 10
Effective length of query: 513
Effective length of database: 917
Effective search space: 470421
Effective search space used: 470421
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
