CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTCACAGACGACTCTCTAATGGCCAATGAGCACTTAAAGAAATGTT
CAACATCCTTAGTTACCAAGGAAATGCAATCAAAACAACTCTGAGATTCC
ACATTATACTTATATACAATAGCTAGAATAAAAAACTCAAGGGACAGCTC
ATTCTGGTAAGGGCTTGGAGTAAGGGAGCACCCCTCCATTGCTAGTGCAA
GTGCAAACTTGTACAGACACTTTGGAAATCAATTTGACCATTTATTAGAA
AATTGGGAGTAGATATATCTCACAACCTGGACATATACCCAAAAGAAGCT
CCACTGAACCATGACATGTGCTTAACTATGTTCATAGAAACTTTATTCAT
AATAAGCAGAAACTGGAAACAACCAAATGTTTCTCAACTAAACAATGGAT
AAAGAAAATATGCAACATTTACACAATGAACTATTACTCAGCCATTACAA
ATAATGGCATCATGAAATTTGCAGACAAATGGATGGAACTAGAAAATATC
ATGTAAGTGAGGCAACCCAGACCCAGAAAGACAAATATGGTATGTACTCA
CTTATAATTTGATATTAGCCATAAAGTGCAGAATAAACATGCTACCAAAT
CCAAAGTAGCTAAGTAACAAGGAGACCCCAAGGGGAGTCACTTGAATCTT
ATTGAGAAGGGGAAAGA

ATGATGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTCTTCCTTAACCCAGCTCAGTTAAT
GACACTTATTCTTGTCATCAGTGTTTGGCTAACTACATGGTTTTAATTTT
AATAAAACATGAGTTTGCCCACTGATATCTACTTACTATATCTACTTCCT
ATATCTACTTCTGTCTCAGAAGGCTGAGACAGAAGAGTCTGATGTTCAAG
GGCAGCTTCAACAGTGCAGCAAGACATGTCTTCAAAACCAACCAACAAAT
CAGTAAATAATTGAATGGAAAGTGGCACTGTGTCCTGAAATAAAATAATT
AACTAAATTATTATTAGAGTGATCTTTTGGAAAATATTATTTACTGGAGT
ATGCTTTCCCATGTTCATGCTTCTCCTTTTAGTAAATGTAAAACCTTTCT
CACACGAGTCATTGTGATTTATCCACTGTGTCTTGAGACCCATTTTCTTA
ATAGTTGCCTATTTATTTTAAATGTCTAATAAGCTTTCTTTACAGATAAA
GCAGCAAAATGTATTGCTTTAAAATATTCTAGTGATTAATACTACTGTGA
ATGTTTAACATGAATGTACTGTGGAGAAAACTGGAATTATTCAGCATTCT
GTGTTTCGTCCATTTAAAGTCCATCAGACTGCATTTAACTGGTTGTTGGG
GCTGGCCTTCCCTCCTGCCC

Query= MSMg01no336_h04.g1 MSMg01no336_h04.g1 CHROMAT_FILE:
MSMg01no336_h04.g1 PHD_FILE: MSMg01no336_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:31 2005
         (546 letters)



>mm_chr5_98272811_98273756
          Length = 946

 Score =  816 bits (422), Expect = 0.0
 Identities = 449/466 (96%), Gaps = 13/466 (2%)
 Strand = Plus / Minus

                                                                       
Query: 81  aaaacatgagtttgcccactgatatctacttactatatctacttcctatatctacttctg 140
           |||||||||||||||||||||             ||||||||||||||||||||||||||
Sbjct: 946 aaaacatgagtttgcccactg-------------atatctacttcctatatctacttctg 900

                                                                       
Query: 141 tctcagaaggctgagacagaagagtctgatgttcaagggcagcttcaacagtgcagcaag 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899 tctcagaaggctgagacagaagagtctgatgttcaagggcagcttcaacagtgcagcaag 840

                                                                       
Query: 201 acatgtcttcaaaaccaaccaacaaatcagtaaataattgaatggaaagtggcactgtgt 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 acatgtcttcaaaaccaaccaacaaatcagtaaataattgaatggaaagtggcactgtgt 780

                                                                       
Query: 261 cctgaaataaaataattaactaaattattattagagtgatcttttggaaaatattattta 320
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 779 cctgaaataaaataattaactaaatttttattagagtgatcttttggaaaatattattta 720

                                                                       
Query: 321 ctggagtatgctttcccatgttcatgcttctccttttagtaaatgtaaaacctttctcac 380
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 719 ctggagtatgctttcccatgttcatgcttctccttttggtaaatgtaaaacctttctcac 660

                                                                       
Query: 381 acgagtcattgtgatttatccactgtgtcttgagacccattttcttaatagttgcctatt 440
           || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 659 acaagtcattgtgatttatccattgtgtcttgagacccattttcttaatagttgcctatt 600

                                                                       
Query: 441 tattttaaatgtctaataagctttctttacagataaagcagcaaaatgtattgctttaaa 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 tattttaaatgtctaataagctttctttacagataaagcagcaaaatgtattgctttaaa 540

                                                         
Query: 501 atattctagtgattaatactactgtgaatgtttaacatgaatgtac 546
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 atattctagtgattaatactactgtgaatgtttaacatgaatgtac 494


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space:   501696
Effective search space used:   501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)