Query= MSMg01no336_n19.b1 MSMg01no336_n19.b1 CHROMAT_FILE:
MSMg01no336_n19.b1 PHD_FILE: MSMg01no336_n19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:03 2005
(553 letters)
>mm_chr5_21369730_21370682
Length = 953
Score = 1025 bits (530), Expect = 0.0
Identities = 542/546 (99%)
Strand = Plus / Plus
Query: 4 ggaattctttactctcaagtttctttctgttgcaaactggtttgactttcatttcctctc 63
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctttacccttaagtttctttctgttgcaaactggtttgactttcatttcctctc 263
Query: 64 cttgctatgggattctgatacaaggcaattctctactcccatacttagaagtatgggctg 123
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 264 cttgctatgggattctgatacaaggcaattctctactcccatacgtagaagtatgggctg 323
Query: 124 gcggaagtgtattttagccagggctgcaattcattgtgggggcttgcttgggctagatct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gcggaagtgtattttagccagggctgcaattcattgtgggggcttgcttgggctagatct 383
Query: 184 tgagttttggtccccggcactctccatagtccagaaattcaaattttattttattttatt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgagttttggtccccggcactctccatagtccagaaattcaaattttattttattttatt 443
Query: 244 ttttttaaaaatgcttagacttcctattgcatatctcagatttgcctccatttttatgcc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttttttaaaaatgcttagacttcctattgcatatctcagatttgcctccatttttatgcc 503
Query: 304 ttgctgtgcatttaacttacagtaccttgggccatggggctcatgcatcccatgatagca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttgctgtgcatttaacttacagtaccttgggccatggggctcatgcatcccatgatagca 563
Query: 364 acgagcaaagcccaacacattagtgttgatgtcaagtcataatgtcaaacgttggacact 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 acgagcaaagcccaacacattagtgttgatgtcaagtcataatgtcaaacgttggacact 623
Query: 424 cctggtagataatacattgatatctaatgcatacaattctccttttcagataggaaacag 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cctggtagataatacattgatatctaatgcatacaattctccttttcagataggaaacag 683
Query: 484 ctgaatcttcccccaaactttcatttttggttgttgttgacgttacattatcactactat 543
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ctgaatcttcccccaaacttccatttttggttgttgttgacgttacattatcactactat 743
Query: 544 tattag 549
||||||
Sbjct: 744 tattag 749
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space: 512049
Effective search space used: 512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no336_n19.g1 MSMg01no336_n19.g1 CHROMAT_FILE:
MSMg01no336_n19.g1 PHD_FILE: MSMg01no336_n19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:03 2005
(502 letters)
>mm_chr5_21525551_21526453
Length = 903
Score = 934 bits (483), Expect = 0.0
Identities = 498/503 (99%), Gaps = 1/503 (0%)
Strand = Plus / Minus
Query: 1 tctccactacccagcatcacggtaagcttgactctaaggaagacagtgtgggcactgcac 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 703 tctccactacccagcatcacagtaagcttgactctaaggaagacagtgtgggcactgcac 644
Query: 61 atagcccagtcttaggactaatgatgtgggcactgcacatagcccagtcttaggactaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 atagcccagtcttaggactaatgatgtgggcactgcacatagcccagtcttaggactaat 584
Query: 121 gtgggcactgcacatagcccagtcttaggacttggttgagactcaacaaatgatcagctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 gtgggcactgcacatagcccagtcttaggacttggttgagactcaacaaatgatcagctc 524
Query: 181 cattcttagtcatgaacaagctgcagtactttccatttattaggtatatttgcaaggcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 cattcttagtcatgaacaagctgcagtactttccatttattaggtatatttgcaaggcca 464
Query: 241 gcaggagtgaatgtgacgattactgaacattccactaacctagacattgaggcttttctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 gcaggagtgaatgtgacgattactgaacattccactaacctagacattgaggcttttctg 404
Query: 301 ttttctttccatattcatcgttcaagtgaaaagtcttagtataaaaactgttaagcaata 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 403 ttttctttccatattcatcgttcaagtgaaaagtcttagtttaaaaactgttaagcaata 344
Query: 361 cttattactcattgttggagaaagtctatattttagacccttgattctcagcccataatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 343 cttattactcattgttggagaaagtctatattttagacccttgattctcagtccataatg 284
Query: 421 aacttat-gatgggcaatagtctacttactatataatgccttctgaggatgcatatacat 479
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 283 aacttatagatgggcaatagtctacttactatataatgccttctgaggacgcatatacat 224
Query: 480 tctctgtgtgcatgtatgcacta 502
|||||||||||||||||||||||
Sbjct: 223 tctctgtgtgcatgtatgcacta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 903
Length adjustment: 10
Effective length of query: 492
Effective length of database: 893
Effective search space: 439356
Effective search space used: 439356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
