ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCGGAA
TTCAAAAATGTCCAAACAGGATTTGTACTTTACAGGTTTATATACCAGAT
CAGTAAACATTGATATTCTTTTTATAAATAATGATATTGAACATTTCTTT
AGGTGCTTCTCAGCCATTTGATATTCCTCAGTTGAAAATTCTTTGTTTAG
TTCTGTACCCCACTTTTAAGAGGGTTATTTGGTTCTCTGGAGTCTAACTT
CTTGAGTTCTTTGCATATATTGGATATTAGCCCTCTATCAGATGTAGGGT
TGATAAAGATTTTTTCCCCAAACTGCTGGTTGCCATTTTGTCCTATTGAC
AGTGTCCTTTGCCTTACAGAGCTTGGCAATTTTATGAGGTCCCATCTGTC
AATTCTTGATCTTACAGCATAAGCTATCAAGGTTCTCTTTAGGAAATTTT
CCCCTGTGCCCATGTGATTGAGGCTCTTCCCCACTTTCTTTTCTATTAGT
TTCAGTGTATCTGGTTTTATATGGCGGTCCTTGGTCCACTTGGACTTGAG
CTTTGTACAAGGAGATAACAATGGATCCTTAGTTGTTAGGGAAATGCAAA
TTAAAAACAACACTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGAT
CAAAAACTCTAGTGACAGCAAATGCTGGTGAAGAGTGGAAGAAAAAGAAA
ACCCCCCCTTTGTTGGTGGACTGCAAACTG

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTAAATAACACAGATGCAGAAAGACAAGC
AGCAGACAATTTCACATGGGAGAGGAATCTTACATATTGAGCACATACAA
GTTGATGACAACATGAAAATATAGTGGTGACCAGAGGATAGAAAAAAGAG
GTGGAAGGCAGGAAAAGAGAGGCTGAAAAAATAAGTCTGATATCATATTT
ACATCACTGTGTACTGAGAGAGTCTTCTCTGAACAACATGTTGTCACATT
CCCTTCTCTTTGGAACTCATACTTTTTACTTATTTCTTCCTTCTTAATTC
TTCTCTGCTTGGAACTCAAAATCATATGAAATGAAATGTTTTTATAGTGG
GCTTAGTTCATGATTTGCCCTTGAAACATAAATGCATCCTGGAATTACAT
TATAAATCCTACACCATAGTTTTTAAGTGTTGGTGTGAAAATTTTACTTA
TCATCTAATTTGGGCATGGAAAGGTGTATCATTGTGGCATTAAACTAGGT
AGCTACTTCCTAGGGTTTATATTATGACAGTTGTCGTCTCCTTAATGGCT
ATTATTCTTTGAGAAATAACTACATTCCGATTTTGGGATAGGTTTCTTAT
ATACCGCCTTTTTGTAAGCTTCTACATTTTCTACCCTAAGGAGAAGATAA
CGGTTTCCTCAAAATTTCCTGTGAAAAG

Query= MSMg01no336_o05.g1 MSMg01no336_o05.g1 CHROMAT_FILE:
MSMg01no336_o05.g1 PHD_FILE: MSMg01no336_o05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:05 2005
         (503 letters)



>mm_chr5_49555157_49556059
          Length = 903

 Score =  901 bits (466), Expect = 0.0
 Identities = 493/502 (98%), Gaps = 2/502 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaaataacacagatgcagaaagacaagcagcagacaatttcacatgggagaggaatctt 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 701 ttaaataacacagatgcagaaagacaatcagcagacaatttcacatgggagaggaatctt 642

                                                                       
Query: 61  acatattgagcacatacaagttgatgacaacatgaaaatatagtggtgaccagaggatag 120
           ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 acaaattgagcacgtacaagttgatgacaacatgaaaatatagtggtgaccagaggatag 582

                                                                       
Query: 121 aaaaaagaggtggaaggcaggaaaagagag-gctgaaaaaataagtctgatatcatattt 179
           ||||||||||||||||| |||||||||||| | |||||||||||||||||||||||| ||
Sbjct: 581 aaaaaagaggtggaaggtaggaaaagagagag-tgaaaaaataagtctgatatcatactt 523

                                                                       
Query: 180 acatcactgtgtactgagagagtcttctctgaacaacatgttgtcacattcccttctctt 239
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 522 acatcactgtgtactgagagagtcttatctgaacaacatgttgtcacattcccttctctt 463

                                                                       
Query: 240 tggaactcatactttttacttatttcttccttcttaattcttctctgcttggaactcaaa 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tggaactcatactttttacttatttcttccttcttaattcttctctgcttggaactcaaa 403

                                                                       
Query: 300 atcatatgaaatgaaatgtttttatagtgggcttagttcatgatttgcccttgaaacata 359
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 402 atcatatgaaatgaaatgtttttatagtggacttagttcatgatttgcccttgaaacata 343

                                                                       
Query: 360 aatgcatcctggaattacattataaatcctacaccatagtttttaagtgttggtgtgaaa 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 aatgcatcctggaattacattataaatcctacaccatagtttttaagtgttggtgtgaaa 283

                                                                       
Query: 420 attttacttatcatctaatttgggcatggaaaggtgtatcattgtggcattaaactaggt 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 attttacttatcatctaatttgggcatggaaaggtgtatcattgtggcattaaactaggt 223

                                 
Query: 480 agctacttcctagggtttatat 501
           ||||||||||||||||||||||
Sbjct: 222 agctacttcctagggtttatat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)