ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTATTGTTACCATCACTACATTGTCATGTTTTATTGTGGTTTTCTTGC
TCTGACCATTTCAATGTCTATGTATAATGAATTTTAGTCCTCCATTCTCT
AGGTTCATGTCCCACTAACCGTCTTTTCCCAACTAAACTGACATACAAAC
AAGTCCCATTTCTATGTTTCTCTCTTTTATCGTTTGTGTGATCCTCTGGG
GCTGGATGATTACTTGCATGGACGTGGGTGGGAGTTATTTACACCAGGTC
CCCCTTATTGCACACAAAAAGATAAAGCTGTATTAGGGTTTCTGTTGCTG
TTACACAAACACCATCACCAAAAGCAACAAGGGGAGGAAAGGGTTGATTT
CAGCTTTCAGTTCAGCATCATAGCCAACCATCCAGAGAAATCAGGACAGG
AATTCAGAGCAGAAACATGGATGCAGGATTTGAAAGAGTGGCCACAAAGG
AGGGTATATAGGAAAATAAAATAAATAGAGGAAAGAAAAAAGGAGGTGAA
GAAGGNCTGTATCTCTTCCTTGTTCCTGCACATCCACTTTACCATATCAG
TTCTACTTTAGGTAATACTCTACACTGATTATTAGCCATAGTGTAGTTTT
GCTATGAACTATCAGGTTCAATTCTGCATGGAATTTTCTTGTGGAAATAT
TTAACTGGGGCCTTAAACATAACTTACAAGGAAGAAGTTTAATTTTGAA

TTGTACAGGCCTGTGGGGGGCCTGGTTCCCCAACGXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAGACAATCCCCAATAGACCTAAGGCCAACT
TGATTTAGGTAATAACCCATTGAGACTTTCTTTCTAACTGTTTCTAGATT
TTATCAAGCTGAATAAAGTANCCATCACAGATANCACTAANTAATTATTT
TTGATCCTTTNATNNATCAAATCAAATACCTGTCCTCTTCTGGGCTCTAT
GGATCTGGCATTTACTGTTAAAAAATTCCATCCCCTAAAATTCCAAATAT
ATTAAATTTGGGGGCTGCTGAACCGGTTTTTGTTCAAAAAACGATTATTT
TAATGCATTTTCCTTTGGGGCTTTCTTTTGGCCGGGAAAAAGGGGGAAAA
TTATTTTTATTTGCCCTTAAACACCCTTTTAAAAAAGGGTTAAAAAGGTT
TTAAAGAGAAAAAAAAAAAAACCCCTGTAAAAGGGCCCCCCCCCCGGTGT
TAAAAAAACACTCCTGCTCCCTAAAAAAAAAAGAGATTTTTTTTTCACCC
AAATTTTCTCCCCCCCCCCAAGTGTGTGTTTTTTTTTTTTTTTGTGGCAA
AAAAAAAGAAGGGGGGGGTGTTTTCTTTCAAAAAAAAAAAAAAAATTTTT
TTTGTTGGGGGGCGGCGCCCCCCTTCTCCCACAAAAAAAAAAACCCCTTC
TTTCTTTTTTTGGGGTGGGGGGGGCAGCACG

Query= MSMg01no336_o17.b1 MSMg01no336_o17.b1 CHROMAT_FILE:
MSMg01no336_o17.b1 PHD_FILE: MSMg01no336_o17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:07 2005
         (487 letters)



>mm_chr5_49413020_49413902
          Length = 883

 Score =  891 bits (461), Expect = 0.0
 Identities = 476/483 (98%), Gaps = 4/483 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctattgttaccatcactacattgtcatgttttattgtggttttcttgctctgacc 64
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 gaattctattgttataatcactacattgtcatgttttattgtggttttcttgctctgacc 426

                                                                       
Query: 65  atttcaatgtctatgtataatgaattttagtcctccattctctaggttcatgtcccacta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 425 atttcaatgtctatgtataatgaattttagtcctccattctctaggttcatgtcccact- 367

                                                                       
Query: 125 accgtcttttcccaactaaactgacatacaaacaagtcccatttctatgtttctctcttt 184
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ---gtcttttcccaactaaactgacatacaaacaagtcccatttctatgtttctctcttt 310

                                                                       
Query: 185 tatcgtttgtgtgatcctctggggctggatgattacttgcatggacgtgggtgggagtta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tatcgtttgtgtgatcctctggggctggatgattacttgcatggacgtgggtgggagtta 250

                                                                       
Query: 245 tttacaccaggtcccccttattgcacacaaaaagataaagctgtattagggtttctgttg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttacaccaggtcccccttattgcacacaaaaagataaagctgtattagggtttctgttg 190

                                                                       
Query: 305 ctgttacacaaacaccatcaccaaaagcaacaaggggaggaaagggttgatttcagcttt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ctgttacacaaacaccatcaccaaaagcaacaaggggaggaaagggttgatttcagcttt 130

                                                                       
Query: 365 cagttcagcatcatagccaaccatccagagaaatcaggacaggaattcagagcagaaaca 424
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 129 cagttcagcatcatagccaaccatccagagaaatcaagacaggaattcagagcagaaaca 70

                                                                       
Query: 425 tggatgcaggatttgaaagagtggccacaaaggagggtatataggaaaataaaataaata 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  tggatgcaggatttgaaagagtggccacaaaggagggtatataggaaaataaaataaata 10

              
Query: 485 gag 487
           |||
Sbjct: 9   gag 7


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 883
Length adjustment: 10
Effective length of query: 477
Effective length of database: 873
Effective search space:   416421
Effective search space used:   416421
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)