BAC Information

Click to search

BAC

Clone NameMSMg01-336P18
Chromosome5 (Build37)
Map Location 67,221,191 - 67,221,679
singlet/doubletsinglet
Overlap gene3732412D22Rik
Upstream geneLOC100041809, Rhoh, LOC626641, EG666827, Chrna9, 9130230L23Rik, BC013481, LOC626714, LOC666854, LOC100042394, Nsun7, Apbb2, Uchl1, LOC100041876
Downstream geneLOC624662, Phox2b, Tmem33, Slc30a9, EG666938, C330024D21Rik, D830007B15Rik, Atp8a1, LOC100042458
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-336P18.T7 (MSMg01no336_p18.b1)MSMg01-336P18.TJ (MSMg01no336_p18.g1)
ACCAG451872AG451873
length743738
length of high quality
(start - end)		492 (44 - 535)493 (72 - 564)
definitionCHROMAT_FILE: MSMg01no336_p18.b1 PHD_FILE: MSMg01no336_p18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:12 2005CHROMAT_FILE: MSMg01no336_p18.g1 PHD_FILE: MSMg01no336_p18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATGTATTGCATGGATACAGAAAAAAAATCTGTATACTATCTATCATA
GGCATAAACTATTGGGCTCACTGGACACACATCTCAGGTTGGGGTTTCTG
AAGCAGTTCGACTTCTGAATTGTCAAATTAATCTTACTTTCATAGTCTCT
TCTACATCATTCTACTTATAATAAATTGGACCATCTCGCTTTATTGGCTC
ACATTCTGTGTTTTGTGGAGGCAGGAAAGAGACCCCGAGGTGGATTATGG
ATCTGAGACAGTTACTCCCCTGACCTAGGGAAAACGATCAACCAGGCAGA
GTATAGCTTCGGATGAAGAGTGATGTCATGTTAATAAGAACTTATAGTGT
TTACTGGGAACTTTCATGCTTCCCAGTGGCCATGGAGAACAGGTAGTTTT
ATTAGTTTGGCTTTATGGTGAAGAAACCTGGCCCAGGGCCCTGGGTCATA
CGGCGAAGTACAACAGCTAAATCATAGCACTGAGACAGATCGGCTCAAGT
GTCCCATTCCTCACCCTGGGGGAGGGAGAGAATTTGGAACAAGCCAGGGC
TTGCCTCCATGACTTCCAAGCGGTCACATGCGCACGCATCTGGGAAAAGT
TAGAGAAATGAATTCCTGAGTATCTGCGAAACCTCCGAATGGATGGTAAA
CGGGGCCTCAAAAGCTGTAAAGAAGGTTTAAAAAACAAATAAA

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCCTCTGAGGAAACAGACTGGGAGGAAGA
AGCAGCCCATTACCAGCCAGCTAATTGGTCAAGAAAAAAGCCAAAAGCGG
CTGGCGAAAGCCAGCGTACTGTTCAACCTCCCGGCAGTCGGTTTCAAGGT
CCGCCCTATGCGGAGCCCCCGCCCTGCGTAGTGCGTCAGCAATGCGCAGA
GAGGCAATGCGCAGAGAGATGCGCAGAGAGGCAATGCGCAGAGAGATGCG
CAGAGAGGCAGTGTGCATAGAGATGCGCAGAGAGGCAGTGCGCAGAGAGA
TGCGCAGAGAGGCAGTGCGCAGAGAGGCAGTGCGCAGAGAGGCAGTGCGC
AGACTCATTCATTCCCAGAGAGGAACAAAGGAAAATACAACAGGCATTTC
CGGTCTTTGAAGGAGCCGAGGGTGGGCGTGTCCACGCTCCGGTAGAATAC
TTACAAATTANAGAAATTGCCGAGTCGGTCCGTAAATACGGAACCAATGC
TAATTTTACCTTGGTGCAGTTAGACAGGCTCGCTGGCATGGCACTAACTC
CTGCTGACTGGCAAACGGTTGTAAAAGCCGCTCTCCCTAGTATGGGGAAA
TATATGGAATGAAGAGCGCTTTGGCACGAAATTGCACAAACGCAAGGCCC
AAAAAAAGCACCTGCTTTTACTCCCAACCAAAAAAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no336_p18.b1 MSMg01no336_p18.b1 CHROMAT_FILE:
MSMg01no336_p18.b1 PHD_FILE: MSMg01no336_p18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:12 2005
         (492 letters)



>mm_chr5_67220987_67221879
          Length = 893

 Score =  899 bits (465), Expect = 0.0
 Identities = 483/489 (98%), Gaps = 1/489 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatgtattgcatggatacagaaaaaaaa-tctgtatactatctatcataggcata 63
           |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 205 gaattcatgtattggatggatacagaaaaaaaaatctgtatactatctatcataggcata 264

                                                                       
Query: 64  aactattgggctcactggacacacatctcaggttggggtttctgaagcagttcgacttct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aactattgggctcactggacacacatctcaggttggggtttctgaagcagttcgacttct 324

                                                                       
Query: 124 gaattgtcaaattaatcttactttcatagtctcttctacatcattctacttataataaat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaattgtcaaattaatcttactttcatagtctcttctacatcattctacttataataaat 384

                                                                       
Query: 184 tggaccatctcgctttattggctcacattctgtgttttgtggaggcaggaaagagacccc 243
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tggaccatctccctttattggctcacattctgtgttttgtggaggcaggaaagagacccc 444

                                                                       
Query: 244 gaggtggattatggatctgagacagttactcccctgacctagggaaaacgatcaaccagg 303
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gagggggattatggatctgagacagttactcccctgacctagggaaaacgatcaaccagg 504

                                                                       
Query: 304 cagagtatagcttcggatgaagagtgatgtcatgttaataagaacttatagtgtttactg 363
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cagagtatagcttcagatgaagagtgatgtcatgttaataagaacttatagtgtttactg 564

                                                                       
Query: 364 ggaactttcatgcttcccagtggccatggagaacaggtagttttattagtttggctttat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggaactttcatgcttcccagtggccatggagaacaggtagttttattagtttggctttat 624

                                                                       
Query: 424 ggtgaagaaacctggcccagggccctgggtcatacggcgaagtacaacagctaaatcata 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggtgaagaaacctggcccagggccctgggtcatacggcgaagtacaacagctaaatcata 684

                    
Query: 484 gcactgaga 492
           |||| ||||
Sbjct: 685 gcaccgaga 693


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 893
Length adjustment: 10
Effective length of query: 482
Effective length of database: 883
Effective search space:   425606
Effective search space used:   425606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |