BAC Information

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BAC

Clone NameMSMg01-337D02
Chromosome5 (Build37)
Map Location 63,053,823 - 63,054,422
singlet/doubletsinglet
Overlap geneCentd1
Upstream geneLOC100041524, G6pd2, LOC100041543
Downstream gene3110047P20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-337D02.T7 (MSMg01no337_d02.b1)MSMg01-337D02.TJ (MSMg01no337_d02.g1)
ACCAG452029AG452030
length7221,349
length of high quality
(start - end)		609 (47 - 655)---
definitionCHROMAT_FILE: MSMg01no337_d02.b1 PHD_FILE: MSMg01no337_d02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:29 2005CHROMAT_FILE: MSMg01no337_d02.g1 PHD_FILE: MSMg01no337_d02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAATCTGCTTTTTTGGCCCTCAATTAAACATATTTCTAATTGTGT
GTATGTTTTCTTTGACATTTCAGAATATATTTATAATACTAAAAAAACCA
CTTTTATAGTCTTTGCTAATTACATTATCTTTTATATTAGTTTGCTATAT
CTATGAACTGGTTATTGCTTTTTTATATCACTCATAATTATGATTAATTT
TTCCTGAAGATTAAACACCATGAATACTGAGTTCTTTTTTAAGTGTGATG
GTAAAGCCTTCCCACAGAGAATATTAATGAAAGTTTTCACATCATTCTTG
TTCAACCCAGAGAATTAGAGCATCTGTGAAGCCACAAGCTTTCGAGGCTC
TATTTTCAGCTTAAAGTAAAAGCCAAGCATCCTTTAGTCTCAGCTGAGTT
AGGCACTATACTCAGCGACTATAGGCAACCCTTCATTCCAACCAAGGGGG
ATAAGAGGTTGAACATGTTCTACTACTATATACTGTGCACCTCAATGGTT
ATTTGATTGGNGACATTCCAGGAAGTGTTTTTGCCTAACCTCTTAGATGT
CCACACTGCAAATTAAGTCCTAAGAAAAGAATACGCTTTTCTTTGACACT
GTTGCGAATCCAGGCTCATGGGACTCCTCTCTTAAAATCCGCCATATTGT
GCCTGTGTTTCCCGATGCGCCA

CGTGTAGGTATTGCTGTGTGCTCGTACCGTGTATCTGTCTGTGGTGCTCT
CCTATTAATTGAGATAGTTAGTACTCTCAACGCATAGTGTATATCACGGC
GCCGTAGTGCTCTGTTTGCTCTCTTCGATGTCGTACTGGCATTAGTGAAC
GACCTTACACGCTATCCGTNTATGACGTCGTCGCGCGCACACGTAAAGTG
AGCGAACTGCGAGTAACGTACGAAGTGTTACTGGGAAATAGTGCGCCGCT
ACTATAATCTCCTACATGGTAGGATGCCGCGGCGTATCGTCCGCGTGCAC
ACTGAAATGGCGGTATTGAGTTAGATCTTGCATGTTATATAACCCCTGTG
TTAAGCAGAGCAATATCGTACGATTATACGTGTGTGCGTCTATATTGGCG
CGTGTATTGAGCATTTGTCATATTAGTAAGTCTCCGCTGTGCACACGCTG
TGTCGCCGCGTGTGAGCGCTGGTTTCTGGAGCATACTCTTGGCCGACCCT
GTGTTCGTCTTTTGATGATATGCACTGATAATCTCGCGTCGCCTACTGAT
ATGTGCTCGCCCGAAGCTTAAAGACGTTGCGTCATCACATTGGCTCTGTC
CGGTTGAGTCTCTTAATATATAACCGCATCATCTAATCTCCNCGCCATCA
TTGTCGAGTCGTACATTACGCGCGACCTCGCTCACTACGAGCTGTGTGAT
ACATATGTGTATAGTCTATACATCGCGCGGCATGTGGACGGCTAATGTGT
ACGCTGAGTATTGTCGCCGATTATCGGTTATTCACATTCTGCTCTTGCCG
CGCGCTCAATGTTACTTATGATATGATCGACATTATAACGCAGATATTAT
GATATCGACAACTCGCGTGCTACTATACCGTGAGTTATGTGTACTCTATT
GTTCTCGGCGTGCACGATGTCCGCGCGCGTCGTGATAGTCGCCTTANTAT
CTATATTGCCCACCGCCGCACCTATTTATCGTNCTCGCCGTGTATTTGTA
TTGATCCTATATATGTGCGTCGATTAGCATNACCTCGGGCGTATATAGAT
GTATTGTCGCGGCGCTCGCCGCGCGATGCGATACGACGCGCTATATATAT
CTCGTCTCGTCTATATTATTCAGATGTACCGCTAGTGTATCACGTATGAC
GGCCGACTTCATCTGGCTCGTATTCTCTCGGTATATACGTGCGCGCGAGT
ATTATTAATACGCACACCTAAATATTATCTACNGCGCGTATATATCTTAC
TCACGGCGATCTTTCGCCTATCTCAACATCATCCCNCNNNNTNTGCTTGT
TGCGTGTATGTTACTCGTAGGACGGTTGATCTATGACACACTACGATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no337_d02.b1 MSMg01no337_d02.b1 CHROMAT_FILE:
MSMg01no337_d02.b1 PHD_FILE: MSMg01no337_d02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:29 2005
         (609 letters)



>mm_chr5_63053619_63054623
          Length = 1005

 Score = 1062 bits (549), Expect = 0.0
 Identities = 589/604 (97%), Gaps = 4/604 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaatctgcttttttggccctcaattaaacatatttctaattgtgtgtatgttttc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaatctgcttttttggccctcaattaaacatatttctaattgtgtgtatgttttc 264

                                                                       
Query: 65  tttgacatttcagaatatatttataatactaaaaaaaccacttttatagtctttgctaat 124
           |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 265 tttgacatttcagaatatatttataatact-aaaaaatcacttttatagtctttgctaat 323

                                                                       
Query: 125 tacattatcttttatattagtttgctatatctatgaactggttattgcttttttatatca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tacattatcttttatattagtttgctatatctatgaactggttattgcttttttatatca 383

                                                                       
Query: 185 ctcataattatgattaatttttcctgaagattaaacaccatgaatactgagttctttttt 244
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct: 384 ctcataattatgattaattttacctgaagattaaacaccatgaatactgagttttttttt 443

                                                                       
Query: 245 aagtgtgatggtaaagccttcccacagagaatattaatgaaagttttcacatcattcttg 304
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aagtgagatggtaaagccttcccacagagaatattaatgaaagttttcacatcattcttg 503

                                                                       
Query: 305 ttcaacccagagaattagagcatctgtgaagccacaagctttcgaggctctattttcagc 364
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 504 ttcaacccagagaattagagcatctgtgaagccacaagctttcaaggctctattttcagc 563

                                                                       
Query: 365 ttaaagtaaaagccaagcatcctttagtctcagctgagttaggcactatactcagcgact 424
           |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct: 564 ttaaaggaaaagccaagcatcctttagtctcagctgagtcaggcactatactcagcgatt 623

                                                                       
Query: 425 ataggcaacccttcattccaaccaagggggataagaggttgaacatgttctactactata 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ataggcaacccttcattccaaccaagggggataagaggttgaacatgttctactactata 683

                                                                       
Query: 485 tactgtgcacctcaatggttatttgattggngacattccaggaagtgtttttgcctaacc 544
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 684 tactgtgcacctcaatggttatttgattggtgacattccaggaagtgtttttgcctaacc 743

                                                                       
Query: 545 tcttagatgtccacactgcaaattaagtcctaagaaaagaatacgcttttctttgacact 604
           ||||||||||| |||||||||||||||||| |||||||   |||||||||||||||||||
Sbjct: 744 tcttagatgtcaacactgcaaattaagtcccaagaaaa---tacgcttttctttgacact 800

               
Query: 605 gttg 608
           ||||
Sbjct: 801 gttg 804


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1005
Length adjustment: 10
Effective length of query: 599
Effective length of database: 995
Effective search space:   596005
Effective search space used:   596005
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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