BAC Information

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BAC

Clone NameMSMg01-337F17
Chromosome5 (Build37)
Map Location 110,614,389 - 110,614,995
singlet/doubletsinglet
Overlap geneGolga3
Upstream geneLOC231589, EG231591, LOC667128, EG211223, EG384220, EG636052, EG384221, LOC667159, LOC667171, Tpte2, EG667185, LOC671695, LOC636173, LOC624831, LOC100041734, LOC100042749, LOC667198, 4930522L14Rik, LOC667243, Plcxd1, Gtpbp6, LOC675812, Chfr
Downstream geneD5Ertd585e, Pgam5, Pxmp2, Pole, P2rx2, Gm1679, 2410025L10Rik, Galnt9, Noc4l, Ddx51, Ep400, Pus1, Ulk1, Hscb, Chek2, Ttc28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-337F17.T7 (MSMg01no337_f17.b1)MSMg01-337F17.TJ (MSMg01no337_f17.g1)
ACCAG452151AG452152
length746753
length of high quality
(start - end)		611 (43 - 653)497 (71 - 567)
definitionCHROMAT_FILE: MSMg01no337_f17.b1 PHD_FILE: MSMg01no337_f17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:42 2005CHROMAT_FILE: MSMg01no337_f17.g1 PHD_FILE: MSMg01no337_f17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGAGCTGCTCAGAATTCACACAGAGGAGACAGGAGCCAGGAGACAGTC
CAGACTCCAATCCAAGACACTCACCCTTTCCCGATGGCGCTTAACTCGGT
ACTGCATCAGCTGCTCTTCCAGGCGCTTCCGGGCCTGCAGTCGAACCTGC
TCCTCCTTTTCCAAAGGCAATGAAGATGCAGTGGAGCCTGCAAGGGCAAT
GGCCATTGAGAGGTTAATAAGGAGCAGGGTACAGAAAACCCATTGGTAAT
CACAGATGTGTTAGCTTGTGAAAAACACACAGCCGCCTATATTCCATGAC
AATTTCCAGACTGAGAGAAAATTGAGGGCCATAGCCACTGAGCACAGCTA
AGAACTGTACTTACAAGTGACACATTGCCAAGATGAGTTAAACACACAGA
TTATCTCATCTGCTGCAGTAACAAGTCATAACACCATGTAAAAAATCAAG
AGCCTATTTAACTGTATTTATTCAGACATTGTCCATTTAATAAACAAAAT
GGCTGATTCGTCCTGCTGCAGCACTTAATGTAGAGTGAAGACCTAGAAGG
CCCTGCTTTGAGGGCCAAGGGCAGGCTACATCTGTTTCCTGACAAATGAG
CTCAAATCCAGAACTCATACTCAAGGACAGATATTANNACACTACTTGTG
TTGGGTTGGGAGGGGGTAAAACTTTAAAAAGTATTGTACTTTGCAG

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAGGACCGTCAGGACTATACAGAGAAACCC
TGTCTCAAAAAACAAAAAACAAAAACAAAAACAAAACAAAACAAAAAATA
ATAAATACACTGATGTATAAAAATGTTAAATGTTTAAACACATTCTCCAA
AGCAAAAATGAAAGTGTTACCATCAAAGATAAGTTACTTAATGTAGAGAA
AATAAAGAAATGAATCAGTTGTTTAAGACTATTATATGTGTGTTCAATTG
TAATGTATCATCAGTATTTAAATTCAAAGAAAACAGTCTGTTTCTTAAAC
TCATTTTTACTTTTTCCCGCAGTATGAATCATGGGCAGAAAGCTTTCTTG
CCATCCAAATAAAGCCACTTTCTGCATTTTTACAATATACTATAATAACA
CATTTGTTTCCCATTTATAACAAGTCTTGCTACAGAAAGCTTGATAGTTC
ATTTCTCTTCTCCATATAATGTGCTAAGTAAACATGAGAAAAATCCTTTG
AAGGAGATTGCTTCAGCTAGATTCTGGGCTTTCTGCATTTCTATAGGAAT
TTGGCAGGAATTTTACATTGAACAAGGATGTAGAAGTAGTCTCCTATAGG
AATCTGCCTTTGAGCTAGGATTTAGGAAGTAGGCTCACAAAAGAATAATT
ACATTTGGCCTAATACAAAGCTCCCGGTAAAATAAACCAAGGAATGTGTG
AAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no337_f17.b1 MSMg01no337_f17.b1 CHROMAT_FILE:
MSMg01no337_f17.b1 PHD_FILE: MSMg01no337_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:42 2005
         (611 letters)



>mm_chr5_110614185_110615195
          Length = 1011

 Score = 1158 bits (599), Expect = 0.0
 Identities = 605/607 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagagctgctcagaattcacacagaggagacaggagccaggagacagtccagact 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 gaattcagagctgctcagaattcacacagaggagacaggagccaggagacagtccagact 752

                                                                       
Query: 65  ccaatccaagacactcaccctttcccgatggcgcttaactcggtactgcatcagctgctc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 ccaatccaagacactcaccctttcccgatggcgcttaactcggtactgcatcagctgctc 692

                                                                       
Query: 125 ttccaggcgcttccgggcctgcagtcgaacctgctcctccttttccaaaggcaatgaaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 ttccaggcgcttccgggcctgcagtcgaacctgctcctccttttccaaaggcaatgaaga 632

                                                                       
Query: 185 tgcagtggagcctgcaagggcaatggccattgagaggttaataaggagcagggtacagaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 tgcagtggagcctgcaagggcaatggccattgagaggttaataaggagcagggtacagaa 572

                                                                       
Query: 245 aacccattggtaatcacagatgtgttagcttgtgaaaaacacacagccgcctatattcca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 aacccattggtaatcacagatgtgttagcttgtgaaaaacacacagccgcctatattcca 512

                                                                       
Query: 305 tgacaatttccagactgagagaaaattgagggccatagccactgagcacagctaagaact 364
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 tgataatttccagactgagagaaaattgagggccatagccactgagcacagctaagaact 452

                                                                       
Query: 365 gtacttacaagtgacacattgccaagatgagttaaacacacagattatctcatctgctgc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gtacttacaagtgacacattgccaagatgagttaaacacacagattatctcatctgctgc 392

                                                                       
Query: 425 agtaacaagtcataacaccatgtaaaaaatcaagagcctatttaactgtatttattcaga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 agtaacaagtcataacaccatgtaaaaaatcaagagcctatttaactgtatttattcaga 332

                                                                       
Query: 485 cattgtccatttaataaacaaaatggctgattcgtcctgctgcagcacttaatgtagagt 544
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 331 cattgtccatttaataaacaaaatggctgattcgtcctgctgtagcacttaatgtagagt 272

                                                                       
Query: 545 gaagacctagaaggccctgctttgagggccaagggcaggctacatctgtttcctgacaaa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 gaagacctagaaggccctgctttgagggccaagggcaggctacatctgtttcctgacaaa 212

                  
Query: 605 tgagctc 611
           |||||||
Sbjct: 211 tgagctc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space:   601601
Effective search space used:   601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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