BAC Information

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BAC

Clone NameMSMg01-337K09
Chromosome5 (Build37)
Map Location 100,954,416 - 100,954,990
singlet/doubletsinglet
Overlap geneCops4
Upstream geneA930011G23Rik, LOC100040738, LOC666364, LOC100040763, LOC100040774, Hnrpd, 4930524J08Rik, Hnrpdl, Enoph1, BC062109, LOC666417, Sec31a, LOC100041797, Lin54
Downstream genePlac8, Coq2, Hpse, Hel308, Mrps18c, Ccdc98, A230097K15Rik, LOC100041888, LOC100040902, Cycs-ps2
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-337K09.T7 (MSMg01no337_k09.b1)MSMg01-337K09.TJ (MSMg01no337_k09.g1)
ACCAG452370AG452371
length764841
length of high quality
(start - end)		575 (63 - 637)221 (73 - 293)
definitionCHROMAT_FILE: MSMg01no337_k09.b1 PHD_FILE: MSMg01no337_k09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:05 2005CHROMAT_FILE: MSMg01no337_k09.g1 PHD_FILE: MSMg01no337_k09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAAAACTTGTCCTCTGGAGAAGTAGCTAATCAGAACTCTAACCACTGA
CCCAGCTCTTCAGCCCTCTCTTCTGTCTTTTAAAAAACATTTATCAGCCG
GGTGTGGTGGCACACGCCTTTAATCCCAGCACTCACACAGTTAACACTGT
ATTAGAGACTCCTTCCTATGACGTACCCCATTCCAGCCTCCTCACTTACA
GTGTGTACACACACACACTCACAGCTCCAGAAAGGAACATTTCTCTTACA
CTCAGATTTACCTACTTATGTATCTGGGCACATTTCAGATAGGTTATACC
TAATGATGTGTCATTTATCATTTTGATTGATTTTTTTCAAATTTGATTAG
TCTATTAAATCAAGATTATAGCTACATCTTGTATTTACATACTCCTAGAG
TATTTTATACAAACTAATATTCAAACTGATAATATTCAAACTAAGTACTT
GACAAATGTGCTGCATAACCTGAAGTTAAGATTTGTTTGATGCTATGGGT
GGTGGCACACGCCTTTAGTCCCAGCACTCAGGAGGCACGGGCAGGCAGAT
CTACATGAGTTCCAGGTCAGCCAGAAAAACCCAGACTCANAAAATACAAA
TTATAAACCATTTTGGAACAATATTTACCTTTTACTTTGTGGCCCGGCCG
TTTTGTCCTGGATGGTNGGCGGGAAACCGAAAAACGAAGAAAGCTCTCTA
CGGCCCTATTGGTT

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGTGGTGTTAGCAGAGGCCTCGAACCAG
ACCGCTGACTCATTGCCATCAGTAAAGCTGTTTGAGCAGAAGGGTGTACC
GTGTGACACGCTGTGACACACCGAAGCTTCCATGGCACAGATGGTTTTTA
TCTGCTTTGTTTTTTGTTGTTTTTGTCTTCTTTTGTGGGGGTGGTTGCAA
GGTCAGAGGGCAGATATGAAGAGTGGGGAGATGAGTGGGATTGTTNNTTT
TNNTTTNTTNNNNNTTTTTTTTTTTTTNTNNNTTNTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTNTTTGANGGGTGGGTGGTTTTTGGTTTGGGTTT
TTTTTTTTTTTGCNCCCCCCTCCCCGTTTTTTTTCTTCTCTGCCCTTTTC
CTTTAGTTCTCCCCTCTTTTTTCTCTTTTTTTTGTCTCGTGTTCTCGCTT
TTCTTCCCCCTTCCTCCCCTTTTGTTTCTTTCACCTTCCTTTTCTCATTA
TTTCTCGTTTCTCTTACGTATGTAATCTCTTTATTTCCCGCTTATCCTAA
TGTATTTTTTATTTGCTTTCTTCATTTCCGACTTCTTCCGTTATTTATCT
TTCATCTCTCTCCATTTGGTAACTATCTCCTTCGGAAAACCTATTCTCTT
TTGTGCCTTTTTTTATCTTCCCGCTCTCCACCTTTTTCCCCCCTCTCTCG
CTCTCTCCATCCGTTTCATTCTTCACCCATTTACTTACTCTCTTCAATTG
TTTTTTTCCTCATTTGTTTTATATTAAATGCTTTCTTCATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no337_k09.b1 MSMg01no337_k09.b1 CHROMAT_FILE:
MSMg01no337_k09.b1 PHD_FILE: MSMg01no337_k09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:05 2005
         (575 letters)



>mm_chr5_100954184_100955158
          Length = 975

 Score = 1065 bits (551), Expect = 0.0
 Identities = 569/575 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctctggagaagtagctaatcagaactctaaccactgacccagctcttcagccctctctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 807 cctctggagaagtagctaatcagaactctaaccactgacccagctctccagccctctctt 748

                                                                       
Query: 61  ctgtcttttaaaaaacatttatcagccgggtgtggtggcacacgcctttaatcccagcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 ctgtcttttaaaaaacatttatcagccgggtgtggtggcacacgcctttaatcccagcac 688

                                                                       
Query: 121 tcacacagttaacactgtattagagactccttcctatgacgtaccccattccagcctcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 tcacacagttaacactgtattagagactccttcctatgacgtaccccattccagcctcct 628

                                                                       
Query: 181 cacttacagtgtgtacacacacacactcacagctccagaaaggaacatttctcttacact 240
           |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 627 cacttacagtatgtacacacacacactcacagctccagaaaagaacatttctcttacact 568

                                                                       
Query: 241 cagatttacctacttatgtatctgggcacatttcagataggttatacctaatgatgtgtc 300
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 cagatttacctacttatggatctgggcacatttcagataggttatacctaatgatgtgtc 508

                                                                       
Query: 301 atttatcattttgattgatttttttcaaatttgattagtctattaaatcaagattatagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 atttatcattttgattgatttttttcaaatttgattagtctattaaatcaagattatagc 448

                                                                       
Query: 361 tacatcttgtatttacatactcctagagtattttatacaaactaatattcaaactgataa 420
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tacgtcttgtatttacatactcctagagtattttatacaaactaatattcaaactgataa 388

                                                                       
Query: 421 tattcaaactaagtacttgacaaatgtgctgcataacctgaagttaagatttgtttgatg 480
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 387 tattcaaactaagtacttgacaaatgtgctgcctaacctgaagttaagatttgtttgatg 328

                                                                       
Query: 481 ctatgggtggtggcacacgcctttagtcccagcactcaggaggcacgggcaggcagatct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ctatgggtggtggcacacgcctttagtcccagcactcaggaggcacgggcaggcagatct 268

                                              
Query: 541 acatgagttccaggtcagccagaaaaacccagact 575
           |||||||||||||||||||||||||||||||||||
Sbjct: 267 acatgagttccaggtcagccagaaaaacccagact 233


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space:   545225
Effective search space used:   545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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