BAC Information

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BAC

Clone NameMSMg01-337M04
Chromosome5 (Build37)
Map Location 152,101,641 - 152,102,093
singlet/doubletsinglet
Overlap genenone
Upstream geneFry, LOC100042068, Gm5, XM_359419, Brca2, B230342M21Rik, BC037393, Aprin, LOC100040180, Kl, LOC667510, Stard13, LOC630708
Downstream geneLOC625175, LOC100042166, EG435877, EG632649, EG632671, Rfc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-337M04.T7 (MSMg01no337_m04.b1)MSMg01-337M04.TJ (MSMg01no337_m04.g1)
ACCAG452456AG452457
length732750
length of high quality
(start - end)
586 (47 - 632)453 (74 - 526)
definitionCHROMAT_FILE: MSMg01no337_m04.b1 PHD_FILE: MSMg01no337_m04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:14 2005CHROMAT_FILE: MSMg01no337_m04.g1 PHD_FILE: MSMg01no337_m04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCACCTGTACAATACCGAATGGCAGAGAAGCACCTGAAAAAATG
TTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGAT
TCCACCTCACACCAGTCCGAATGGCTAAGATCAAAAATTCAGGTGACAGC
AGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTG
GGATTGCAGGCTTGTACAACCAGTCTGGAAATCAGTCTGGCGGTTCCTCA
GAAAACTGGATATAGTACTACCTGAGGATCCAGCAATATCTCTCCTGGGC
ATATTTCCAGAAGATGCCCCAACAGGTAAGAAGGACACATGCTCCACTAT
GTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAGGAACCCAGAT
GCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATG
GAGTACTACTCAGCTGTTAATAAGAATGAATTTATTAAATTCCTAGCCAA
ATTGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAA
GGAACTCACACAATATGTACTCACTTATAAGTGGATATTAGCCCAATACC
TAGGATAACCCAGATACAAGATACAATTTTCTAAACACATGAAACTCAAG
AATAATGAAGACTGAAGTGTGGACACTATGCC
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTACAGATAACACAAAACTGCTGCGC
TGAAGACCGGGATGAGGGAAGGCTGGGATGAGGGAAGGCTGGGGCAGAGG
AGTGTATGCAGGCAGTTTCCCTATCTGTGCTTTTGTGGTGCTTGACTGTA
TTGTTTCATACTTACAAAGGGCTTTAAACGCTTCTCTCCGCCAGTGGATG
TGAATGCTGGGAATACTGACTTGTCTGTTCCCTTAGGGTATTAACAGATT
AGCAGAGCGCCCATGACCCCTTTTCTGAAATTCTACAAGATCTAAAACTG
CTGGAGAGATGGCTCACTAGTTAAGAGCACTGGCTGCTTTTGAAGAGGAC
CAAAGTTCGATTCCCAGCACCCATACGGTGGCTCACAACTGCCTGTAATA
CCAGTTCCAGGGTATCCGACGCCCTCTTCTGGCCTCCACGAGTAAGTACT
TCTTCATGCATGCCCTGTACAGATGGCGTAGGTTTCAGCCATGGTCCTGA
ACTGTGCTGTGTGAACTCAGAAAACCAAATAAGCATCTTTCTGCTTACTC
GGAAGCATTTTGCTCTTTTGGAACCTAGATTTCTGAATTTATTTTTGAAG
AATCTTGTTTTTGATTCTACGCCCCCGTAACACACAGGGTACATTCCCCT
CCTGTCTTATTGTTTAATTTTGTCTTCTGTCCATCTCTTCCTAAATCTTN

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no337_m04.g1 MSMg01no337_m04.g1 CHROMAT_FILE:
MSMg01no337_m04.g1 PHD_FILE: MSMg01no337_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:14 2005
         (453 letters)



>mm_chr5_152101441_152102293
          Length = 853

 Score =  806 bits (417), Expect = 0.0
 Identities = 444/453 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttacagataacacaaaactgctgcgctgaagaccgggatgagggaaggctgggatgagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttacagataacacaaaactgctgcgctgaagaccgggatgagggaaggctgggatgagg 260

                                                                       
Query: 61  gaaggctggggcagaggagtgtatgcaggcagtttccctatctgtgcttttgtggtgctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaggctggggcagaggagtgtatgcaggcagtttccctatctgtgcttttgtggtgctt 320

                                                                       
Query: 121 gactgtattgtttcatacttacaaagggctttaaacgcttctctccgccagtggatgtga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gactgtattgtttcatacttacaaagggctttaaacgcttctctccgccagtggatgtga 380

                                                                       
Query: 181 atgctgggaatactgacttgtctgttcccttagggtattaacagattagcagagcgccca 240
           || ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 381 attctgggaatactgacttgtctgtttccttagggtattaacagattagcagagggccca 440

                                                                       
Query: 241 tgaccccttttctgaaattctacaagatctaaaactgctggagagatggctcactagtta 300
           |||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaccccaaatctgaaattctacaagatctaaaactgctggagagatggctcactagtta 500

                                                                       
Query: 301 agagcactggctgcttttgaagaggaccaaagttcgattcccagcacccatacggtggct 360
           |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 501 agagcactggctgcttttgaggaggaccaaagttcgattcccagcacccacacggtggct 560

                                                                       
Query: 361 cacaactgcctgtaataccagttccagggtatccgacgccctcttctggcctccacgagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 561 cacaactgcctgtaataccagttccagggtatccgacgccctcttctggcctccatgagt 620

                                            
Query: 421 aagtacttcttcatgcatgccctgtacagatgg 453
           |||||||||||||||||||||||||||||||||
Sbjct: 621 aagtacttcttcatgcatgccctgtacagatgg 653


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space:   373449
Effective search space used:   373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)