Query= MSMg01no338_c18.b1 MSMg01no338_c18.b1 CHROMAT_FILE:
MSMg01no338_c18.b1 PHD_FILE: MSMg01no338_c18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:45 2005
(701 letters)
>mm_chr5_97773832_97774933
Length = 1102
Score = 992 bits (513), Expect = 0.0
Identities = 594/653 (90%), Gaps = 52/653 (7%)
Strand = Plus / Plus
Query: 4 ggaattctctc-aagttacatgcttgaacaagtcctgaaatgtttctgcactattcactg 62
||||||||| | ||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctcccaaagctaaatgcttgaacaagtcctgaaatgtttctgcactattcactg 263
Query: 63 tgagaagtagtagccagaggcatcacctaccctccagttgtaaacacacacttccttaga 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgagaagtagtagccagaggcatcacctaccctccagttgtaaacacacacttccttaga 323
Query: 123 gacaggcttgaagcccttgagtggctaaagtctacccaggagaaagttactttatgataa 182
|||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 324 gacaggcttgaagcccttgactggctaaagtctacccaggagaaagttact--------- 374
Query: 183 actcctaagttgtggtctgctgtggtttgcatctgaaatatccatcacagattgaaggtg 242
|||||||||||||||||||| ||
Sbjct: 375 -------------------------------------atatccatcacagattgaagatg 397
Query: 243 tgggcctcacacagcaataatcagagatgcagccttgggttggaagtggatcctgagggc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 tgggcctcacacagcaataatcagagatgcagccttgggttggaagtggatcctgagggc 457
Query: 303 tcagacatcatccactgattaagttgttaattgtttcaaaactttctgggttattggagg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 tcagacatcatccactgattaagttgttaattgtttcaaaactttctgggttattggagg 517
Query: 363 aagtaaaaacttcaggaagtgaaacctacttggaaaaagtagatcatttagactgtgtcc 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 aagtaaaaacttcaggaagtgaaacctacttggaaaaagtagatcatttagactgtgtcc 577
Query: 423 ttgaagggtgagctcactctgtctgtctctatctctcagtatctctctgtctctgtctcc 482
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 578 ttgaagggtgagctcactctgtctgtctctatctctcagtatctctctgtctctgtttcc 637
Query: 483 caatctccagatatatgatatgtatgtgtgtgtatatattcatatgtacacacatatatt 542
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 caatctccagatatat---atgtatgtgtgtgtatatattcatatgtacacacatatatt 694
Query: 543 gatacacacatatatatgtatatacacacatataggtatatatgatgtgtatgatacata 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 gatacacacatatatatgtatatacacacatataggtatatatgatgtgtatgatacata 754
Query: 603 taatatgatatatatgacacacacacacatatatcatatggatatatatatat 655
||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 755 taatatgatatatatgacacacacaca--tatatcatatgtatatatatatat 805
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1102
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1092
Effective search space: 754572
Effective search space used: 754572
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no338_c18.g1 MSMg01no338_c18.g1 CHROMAT_FILE:
MSMg01no338_c18.g1 PHD_FILE: MSMg01no338_c18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:45 2005
(618 letters)
>mm_chr5_97926834_97927851
Length = 1018
Score = 1052 bits (544), Expect = 0.0
Identities = 597/616 (96%), Gaps = 4/616 (0%)
Strand = Plus / Minus
Query: 1 actgagatgcacacctgtgcctacctg--catacacacacagaaaataaaattgtataaa 58
||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||
Sbjct: 879 actgagatgcacacctgtgcctacctgcacacacacacacacaaaataaaattgtataaa 820
Query: 59 ccacaggaaaggaatgggaaggcccttctgccctcattggtccaccactgaaagaagagg 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 ccacaggaaaggaatgggaaggcccttctgccctcattggtccaccactgaaagaagagg 760
Query: 119 aaaatcttaagcttactcaccactatatttaagggataattttcatattaaatgatgtca 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 aaaatcttaagcttactcaccactatatttaagggataattttcatattaaatgatgtca 700
Query: 179 gagcaagtcatttttaatggtagacagatttttatattagtgaaagtaaaatgaatcaca 238
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 gagcaagtcgtttttaatggtagacagatttttatattagtgaaagtaaaatgaatcaca 640
Query: 239 aacaccaactttaaattttttttttttaattaaccactgtttagcccttggacttagtaa 298
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 aacaccaactttaa--tttttttttttaattaaccactgtttagcccttggacttagtaa 582
Query: 299 ggcattacgtagtcttttataaaaatataaacaagttgttacaagccatttaaaatcagc 358
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 581 ggcattatgtagtcttttataaaaatataaacaagttgttacaaaccatttaaaatcagc 522
Query: 359 atattggcaaagaggcctgggttgtcagcagtaacttagaaatttgctacattagttact 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 atattggcaaagaggcctgggttgtcagcagtaacttagaaatttgctacattagttact 462
Query: 419 tttctgttgccatgataaaattccatgaccaaagtcaaggtcagtgaaagtttattttgg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tttctgttgccatgataaaattccatgaccaaagtcaaggtcagtgaaagtttattttgg 402
Query: 479 cttttggctccagaggactaaagttcataattgttggaaaggtgtggcacagcagtcaga 538
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 401 cttttggctccagaggactaaagtccataaatgttggaaaggtgtggcacagcagtcaga 342
Query: 539 gcaggaaggagagagagagagagagagagagagagagagagagagagagagagagagaga 598
|||||||||||||||||| ||||| ||||||| ||||| ||||||| ||||| ||||| |
Sbjct: 341 gcaggaaggagagagagaaagagacagagagacagagacagagagacagagacagagaca 282
Query: 599 gagagagagagagaga 614
|||||| |||||||||
Sbjct: 281 gagagacagagagaga 266
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 60
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space: 612864
Effective search space used: 612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
