Query= MSMg01no338_e13.b1 MSMg01no338_e13.b1 CHROMAT_FILE:
MSMg01no338_e13.b1 PHD_FILE: MSMg01no338_e13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:53 2005
(547 letters)
>mm_chr5_107864722_107865668
Length = 947
Score = 810 bits (419), Expect = 0.0
Identities = 451/471 (95%), Gaps = 16/471 (3%)
Strand = Plus / Minus
Query: 87 agctttgaggaataaatgatttggattaagaaaatgtgaagggccgggcgtgttggcaca 146
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 947 agctttgaggaataaatgatttggattaagaaaatgtgaagggccaggcgtggtggcaca 888
Query: 147 cgcctttgatcccagcacttgggaggcagaggcaggcagatttctgagttcgaggccagc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887 cgcctttgatcccagcacttgggaggcagaggcaggcagatttctgagttcgaggccagc 828
Query: 207 ctggtctacaaagtgagttccaggacagccggggctacacagaaaccctgtctcgaaaaa 266
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 ctggtctaaaaagtgagttccaggacagccggggctacacagaaaccctgtctcgaaaaa 768
Query: 267 cc----------aaaaaaaattttttagtgaaggttaaccctctcatgattcacagcttc 316
|| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 767 ccaaaaaaaaaaaaaaaaaa------agtgaaggttaaccctctcatgattcacagcttc 714
Query: 317 ctgttttcatgcctaactccactgccccatctggtttcatatcacaactattaagttatc 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 ctgttttcatgcctaactccactgccccatctggtttcatatcacaactattaagttatc 654
Query: 377 tgccatttttttgagggcttccccaccccaatagtccttaaattgtaaggcttttatact 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 tgccatttttttgagggcttccccaccccaatagtccttaaattgtaaggcttttatact 594
Query: 437 attctaagtcgagcgtgtggctctaaagactccaagctaggatctgcttttattaatgca 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 attctaagtcgagcgtgtggctctaaagactccaagctaggatctgcttttattaatgca 534
Query: 497 aatgtgcgatgtgtcaggcccaaatgaaattccatctctccaaattctggt 547
|||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 aatgtgcgatatgtcaggcccaaatgaaattccatctctccaaattctggt 483
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space: 503169
Effective search space used: 503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no338_e13.g1 MSMg01no338_e13.g1 CHROMAT_FILE:
MSMg01no338_e13.g1 PHD_FILE: MSMg01no338_e13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:53 2005
(497 letters)
>mm_chr5_107689995_107690891
Length = 897
Score = 953 bits (493), Expect = 0.0
Identities = 496/497 (99%)
Strand = Plus / Plus
Query: 1 aggtgcatccaaatggaaatgagacaaagtgtgtgtccaggttgtgggcaagcttccaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtgcatccaaatggaaatgagacaaagtgtgtgtccaggttgtgggcaagcttccaag 260
Query: 61 aggacacacctggacaccacatcaagtcaggaatgaagaaggccctggcaccacaacagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggacacacctggacaccacatcaagtcaggaatgaagaaggccctggcaccacaacagg 320
Query: 121 ggaggctttgcagaactcacctcaaagacctctcctgacctggcacacgcctgccagcaa 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 ggaggctttgcagaactcacctcaaagacctctcctgacctggcacatgcctgccagcaa 380
Query: 181 acgcagccaaagccctgtcttctagccaaactgatttcccgaaattctctctgcatgcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acgcagccaaagccctgtcttctagccaaactgatttcccgaaattctctctgcatgcct 440
Query: 241 tttcctcattactaggacaagggagacacagtcctgctggtcactggcagacctcagaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttcctcattactaggacaagggagacacagtcctgctggtcactggcagacctcagaag 500
Query: 301 caacaaccactattgtttttagagatgtgtagtagtctttaaagtgaaagcagacttgag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caacaaccactattgtttttagagatgtgtagtagtctttaaagtgaaagcagacttgag 560
Query: 361 cttatgggacaagcattagttttcgagcttcttgctttcctgatgttagatcacaggatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttatgggacaagcattagttttcgagcttcttgctttcctgatgttagatcacaggatg 620
Query: 421 tacaataaggggccagtcaacagcctgtggtaatttctaataaaaaggcaccctgcttct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tacaataaggggccagtcaacagcctgtggtaatttctaataaaaaggcaccctgcttct 680
Query: 481 tacatggtatatctttc 497
|||||||||||||||||
Sbjct: 681 tacatggtatatctttc 697
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space: 431969
Effective search space used: 431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
