BAC Information

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BAC

Clone NameMSMg01-338G19
Chromosome5 (Build37)
Map Location 38,331,640 - 38,506,113
singlet/doubletdoublet
Overlap geneStx18
Upstream genePpp2r2c, Wfs1, Jakmip1, EG330070, Gm1043, LOC100040936, Crmp1, Evc, Evc2, LOC100040355, LOC100040988, Stk32b, Cytl1, Msx1
Downstream geneNsg1, LOC100040397, Zfp509, Lyar, Tmem128, Otop1, Drd5, 4930487D11Rik, Slc2a9, Wdr1, 4930421P07Rik, 6820424L24Rik, Clnk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-338G19.T7 (MSMg01no338_g19.b1)MSMg01-338G19.TJ (MSMg01no338_g19.g1)
ACCAG452956AG452957
length731731
length of high quality
(start - end)		587 (17 - 603)462 (91 - 552)
definitionCHROMAT_FILE: MSMg01no338_g19.b1 PHD_FILE: MSMg01no338_g19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:27:03 2005CHROMAT_FILE: MSMg01no338_g19.g1 PHD_FILE: MSMg01no338_g19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:27:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,505,643 - 38,506,113)(38,331,640 - 38,332,101)
sequence
CTCCTATAGGTACAGGATCCGCGGAATTCCCTGCCTTATTTCTATTGTTG
TTAGTTTGTTTTCATTATGTTGCTCTGGCTGTCTTGGACTCACTTTGTTG
ATCTGCTTGCCCCTGCTCCCTGAGTCCTGGGATTAAAGGTGTGTGCCGCC
ATACCTGACTTCCATTTATTATTTGCGTTCACTGTTTCCTGGCTGGCCAG
TGAACCCCAGTGCTGAGATTACAGGTGAGTGAGTACCAGCATGCCCAGGC
CATACATGAGAGTTAGGTAACTGAACTCTGTCCTTACACTTGCACAGCAA
GCACTTTACCCCCAAGCCATCTGTCCAGGCCCCAGCATACAAAACAAGCA
CTCCCCTGTTCCTCTGCATGCACTTGTTCCTCTTTGGAGTAGGTCTGTCT
GTGTGAGTTGTGTGCTGCTCAGCTAGATTAGTGTCTGCATGCAGTGCTAA
CTGAGATCTGCAAAGAGGCCCCTAAAGGGACCATGCATTTACTGAGTGTA
TGGCTTCAATGAGTGAACCTTTGTGGTAGGGCTAGTGTAAGAAAGGCCCT
TGAAATGGCCATGGGGACCTTGGTCCTTCCCTTCTCTTTGTTCTCCAACT
GTGTTGCCATGANGAAAACAGGCTTCGTTTGTAATGTACTGTATCACCAG
GGCCAAGCAAAGTATAAGCAGAAACTTCTGAAACTTTGACCCCAACAGAA
CTTCCCCTTTCTGACTTCTAATTTTTAATTT

GATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAGGANATGAACGTTCTTTT
AAACAATCCCAGCTCCTTGGACCAAGCCAGAGTTCTTCAGTGGTTGGAGA
GATATTCCTGGTTTATTAAGGACTGAGTGGAAAGAAGGCAGGAGGCCAAG
CTTGGTTGTTCTTGAAGGCTGGCACCAAGCAGCTCAGGCTTTTCACATGC
CCACGAAGGAGGACACACAGATAGTAAACATGAAGCCTGGGGAATCCCAG
ACCTGGAGAGAGACTTGGGAGCTCTGACTCCATTGACATGTGCCAGCAGG
TGGCCTTGAAGAAGCCTGGTTGCCTGCTGGGTTTTCACCCAGGCCAGTCA
GTAGACACCATGATGGGCAGGGCTCTGGGAAATGATCTGGGTCCCAGCTT
TGCTCTTTATCAACCATGGAGCCTTTATTTGCTTACCCTGTGAGCCAGCA
TCTCTTTACCTGGATGCTAGGCATCAAGACGTGTATGAGCGCTGCCGAGA
TGTTAGAGTGGGTGTAAGGATCGTCATGTCTTTATNAAGCACACAGTGTC
TTTAGTGGCCCTGGTTCCTGTGACATTGGCAGTATGATAGATAGAGCTAT
CTGATCTCTCACTCTGAACACCATAAATGTCTGTGTTTGTAGGCCAAGAA
ATGTGGAAGTAAGGAAGGAAGGGTGAGCNTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no338_g19.b1 MSMg01no338_g19.b1 CHROMAT_FILE:
MSMg01no338_g19.b1 PHD_FILE: MSMg01no338_g19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:03 2005
         (587 letters)



>mm_chr5_38505127_38506113
          Length = 987

 Score =  888 bits (459), Expect = 0.0
 Identities = 468/471 (99%)
 Strand = Plus / Minus

                                                                       
Query: 117 ttaaaggtgtgtgccgccatacctgacttccatttattatttgcgttcactgtttcctgg 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 987 ttaaaggtgtgtgccgccatacctgacttccatttattatttgcgttcactgtttcctgg 928

                                                                       
Query: 177 ctggccagtgaaccccagtgctgagattacaggtgagtgagtaccagcatgcccaggcca 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 927 ctggccagtgaaccccagtgctgagattacaggtgagtgagtaccagcatgcccaggcca 868

                                                                       
Query: 237 tacatgagagttaggtaactgaactctgtccttacacttgcacagcaagcactttacccc 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 tacatgagagttaggtaactgaactctgtccttacacttgcacagcaagcactttacccc 808

                                                                       
Query: 297 caagccatctgtccaggccccagcatacaaaacaagcactcccctgttcctctgcatgca 356
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 807 caagccatctgtccaggccccagcatacacaacaagcactcccctgttcctctgcatgca 748

                                                                       
Query: 357 cttgttcctctttggagtaggtctgtctgtgtgagttgtgtgctgctcagctagattagt 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 747 cttgttcctctttggagtaggtctgtctgtgtgagttgtgtgctgctcagccagattagt 688

                                                                       
Query: 417 gtctgcatgcagtgctaactgagatctgcaaagaggcccctaaagggaccatgcatttac 476
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 gtctgcatgcagtgctagctgagatctgcaaagaggcccctaaagggaccatgcatttac 628

                                                                       
Query: 477 tgagtgtatggcttcaatgagtgaacctttgtggtagggctagtgtaagaaaggcccttg 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tgagtgtatggcttcaatgagtgaacctttgtggtagggctagtgtaagaaaggcccttg 568

                                                              
Query: 537 aaatggccatggggaccttggtccttcccttctctttgttctccaactgtg 587
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 aaatggccatggggaccttggtccttcccttctctttgttctccaactgtg 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space:   563729
Effective search space used:   563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no338_g19.g1 MSMg01no338_g19.g1 CHROMAT_FILE:
MSMg01no338_g19.g1 PHD_FILE: MSMg01no338_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:03 2005
         (462 letters)



>mm_chr5_38331440_38332301
          Length = 862

 Score =  862 bits (446), Expect = 0.0
 Identities = 458/462 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acgttcttttaaacaatcccagctccttggaccaagccagagttcttcagtggttggaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acgttcttttaaacaatcccagctccttggaccaagccagagttcttcagtggttggaga 260

                                                                       
Query: 61  gatattcctggtttattaaggactgagtggaaagaaggcaggaggccaagcttggttgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatattcctggtttattaaggactgagtggaaagaaggcaggaggccaagcttggttgtt 320

                                                                       
Query: 121 cttgaaggctggcaccaagcagctcaggcttttcacatgcccacgaaggaggacacacag 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttgaaggctggcaccaagcggctcaggcttttcacatgcccacgaaggaggacacacag 380

                                                                       
Query: 181 atagtaaacatgaagcctggggaatcccagacctggagagagacttgggagctctgactc 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atagtaagcatgaagcctggggaatcccagacctggagagagacttgggagctctgactc 440

                                                                       
Query: 241 cattgacatgtgccagcaggtggccttgaagaagcctggttgcctgctgggttttcaccc 300
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cattgacatgtgccagcaagtggccttgaagaagcctggttgcctgctgggttttcaccc 500

                                                                       
Query: 301 aggccagtcagtagacaccatgatgggcagggctctgggaaatgatctgggtcccagctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggccagtcagtagacaccatgatgggcagggctctgggaaatgatctgggtcccagctt 560

                                                                       
Query: 361 tgctctttatcaaccatggagcctttatttgcttaccctgtgagccagcatctctttacc 420
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 561 tgctctttatcaaccatggagcctttatttgcttaccctgtaagccagcatctctttacc 620

                                                     
Query: 421 tggatgctaggcatcaagacgtgtatgagcgctgccgagatg 462
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggatgctaggcatcaagacgtgtatgagcgctgccgagatg 662


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space:   385104
Effective search space used:   385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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