Query= MSMg01no338_n24.b1 MSMg01no338_n24.b1 CHROMAT_FILE:
MSMg01no338_n24.b1 PHD_FILE: MSMg01no338_n24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:36 2005
(603 letters)
>mm_chr5_16185235_16186237
Length = 1003
Score = 1069 bits (553), Expect = 0.0
Identities = 583/593 (98%), Gaps = 1/593 (0%)
Strand = Plus / Minus
Query: 5 gaattccttcttgttgctccttatagatttctgttctctgtctcttagctgcctactctc 64
|||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 593 gaattccttcttgtccctccttatagatttctgttctctgtctcttagccgcctactctc 534
Query: 65 cctatggtggagttctttttgtgatacttcctcttttttgtcttagatccaatttttttt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 cctatggtggagttctttttgtgatacttcctcttttttgtcttagatccaatttttttt 474
Query: 125 ctcagattcagacattttttttaaggtttccccatcttactgagaattgcctgagctcag 184
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ctcagattcagacattgtttttaaggtttccccatcttactgagaattgcctgagctcag 414
Query: 185 tatagcttgctggacaaagacagtacacccaatttccaaattttcacagattgaaacaac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tatagcttgctggacaaagacagtacacccaatttccaaattttcacagattgaaacaac 354
Query: 245 ttctgccattgcacatataaataatctcaagttctcttatatctaaggttttacaacttt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ttctgccattgcacatataaataatctcaagttctcttatatctaaggttttacaacttt 294
Query: 305 ctacccttaaatcatttatctctataatttttctgtgttttgctgtcaacaaatctttta 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 ctacccttaaatcatttatctctataatttttctgtgttttgctgtcaacaaatctttta 234
Query: 365 aaactgttatgtgaacagtctttatcagaattgatttgtaaattaattgcgtatggttaa 424
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 233 aaactgttatgtgaacagtctttatcagaattgattcgtaaattaattgcgtatggttaa 174
Query: 425 agaatctgtaaaatctgtaacaattttggccttcaacttttat-aaaaaaaaataaatga 483
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct: 173 agaatctgtaaaatctgtaacaattttggccttcaacttttataaaaaaaaaatgaatga 114
Query: 484 ttttttaaagtttaacctaacagaaataaagtgcaaaattgtaatcttataaaaagcaat 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 atttttaaagtttaacctaacagaaataaagtgcaaaattgtaatcttataaaaagcaac 54
Query: 544 taacttattataaactgtttaagatgacatgcaagttaaaaattgtcttataa 596
||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 53 taacttattataaactgtttaagatgacatgcaagttaataattgtcttataa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space: 588849
Effective search space used: 588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no338_n24.g1 MSMg01no338_n24.g1 CHROMAT_FILE:
MSMg01no338_n24.g1 PHD_FILE: MSMg01no338_n24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:36 2005
(520 letters)
>mm_chr5_16006026_16006945
Length = 920
Score = 938 bits (485), Expect = 0.0
Identities = 512/521 (98%), Gaps = 2/521 (0%)
Strand = Plus / Plus
Query: 1 ttccatggaagacttgtttgttgttgacaaagacaacaaactgttgttatagtctactag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttccatggaagacttgtttgttgttgacaaagacaacaaactgttgttatagtctactag 260
Query: 61 aggaagcaatacatgctttcttcagtgtttaattttgtttcttcatccagtcatcatcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggaagcaatacatgctttcttcagtgtttaattttgtttcttcatccagtcatcatcca 320
Query: 121 ttcatttatccatccactcatccatccatatgtccaggaaccaatttgtcttagttaagg 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 ttcatttatccatccactcatccatccatatgtccagtaaccaatttgtcttagttaagg 380
Query: 181 tttctattgctgcgataaaacaccatgaccaaaagaaagatggggagaaaagggcttatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttctattgctgcgataaaacaccatgaccaaaagaaagatggggagaaaagggcttatt 440
Query: 241 tggcttacacttccacactgtagtccattattgaaggaagccaggacaggaactcaaatt 300
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 tggcttacacttccacactgtagttcattattgaaggaagccaggacaggaactcaaatt 500
Query: 301 ggacaggaacccggtgcaacagagggcatagtggggtgctgcttactgacttgctcagcc 360
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 501 ggacaggaacccggtgcaacagagggcatagcggggtgctgcttactgacttgctcagcc 560
Query: 361 ctgctttcttatagaacctaggaccaccagcccagggatggcacccccacagtgggctgg 420
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgctttcttatagaatctaggaccaccagcccagggatggcacccccacagtgggctgg 620
Query: 421 accctgccccatcaataattaagaaaattcccttacagtcttgcctgctagcccattttt 480
|||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||
Sbjct: 621 accctgccccatcaataattgagaaaattcccttacaggcttgcctgcaagcccattttt 680
Query: 481 atgagaactttttttcttaattgtgttttccc-tctctctg 520
|||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 681 atgagaactttttt-cttaattgtgttttcccctctctctg 720
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space: 464100
Effective search space used: 464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
