Query= MSMg01no339_b12.b1 MSMg01no339_b12.b1 CHROMAT_FILE:
MSMg01no339_b12.b1 PHD_FILE: MSMg01no339_b12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:52 2005
(448 letters)
>mm_chr5_145128115_145128962
Length = 848
Score = 774 bits (400), Expect = 0.0
Identities = 433/446 (97%), Gaps = 6/446 (1%)
Strand = Plus / Minus
Query: 1 aacacatgcgcacgtaaagtttataaaattaacatttctttatttttatttatttgtatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aacacatgcgcacgtaaagtttataaaattaacatttctttatttttatttatttgtatg 381
Query: 61 tctatgcatgtggacgtgtatacactacagtgtatggaagccagagaacaactcctcagg 120
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 380 tctatgcatgtggacgtgtatacactacagtgaatggaagcccgagaacaactcctcagg 321
Query: 121 gatggtcttctccttctactgtgtgggtccagagaatcaaacttaagatgtctgatttga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gatggtcttctccttctactgtgtgggtccagagaatcaaacttaagatgtctgatttga 261
Query: 181 cttcctctttttttttttaagatttgttttttttaattttatgtatgtgagtacactgta 240
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 260 cttcctc-ttttttttttaagatttg---tttttaattttatgtatgtgagtacactgta 205
Query: 241 gctctcttcagacataccagaagagggcattggatctcattatagatggttgtgagccac 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gctctattcagacataccagaagagggcattggatctcattatagatggttgtgagccac 145
Query: 301 catatagttgctgggacttgacctctggaagggcagtcaatgctcttacttactgagtca 360
| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 144 c--atagttgctgggacttgacctctggaaggacagtcactgctcttacttactgagtca 87
Query: 361 tctttccagccccttatttgactttttagaaaattattaaaaagaggcttggcggtggtg 420
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 86 tctttccagccccttatttgactttttagaaaattattaaaaagaggctgggtggtggtg 27
Query: 421 gtgcacacctttaatccccgcactca 446
||||||||||||||||||||||||||
Sbjct: 26 gtgcacacctttaatccccgcactca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space: 367044
Effective search space used: 367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no339_b12.g1 MSMg01no339_b12.g1 CHROMAT_FILE:
MSMg01no339_b12.g1 PHD_FILE: MSMg01no339_b12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:52 2005
(494 letters)
>mm_chr5_144961919_144962812
Length = 894
Score = 924 bits (478), Expect = 0.0
Identities = 490/494 (99%)
Strand = Plus / Plus
Query: 1 tcccagggtagagagaccagctggagccaccctgtgttgccacagtgcctgggtcacagc 60
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 201 tcccagggtagagagaccagctggagctaccctgtgttgccatagtgcctgggtcacagc 260
Query: 61 aaccaacccacctactgaagccagggctcaccgtgtgatctgcgagtcagctttccctta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaccaacccacctactgaagccagggctcaccgtgtgatctgcgagtcagctttccctta 320
Query: 121 tgcctcaaaccctaggatgccgcagcccctcgcccagtaaccacagatgtgaccttagct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcctcaaaccctaggatgccgcagcccctcgcccagtaaccacagatgtgaccttagct 380
Query: 181 ggaaatgatggtttatcgtttgttttattctgagacagtttctctatatagcacctggcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaaatgatggtttatcgtttgttttattctgagacagtttctctatatagcacctggcc 440
Query: 241 aacctgaacaaacagatacctaagagtttaccaaactgtccttttgagcattcccggaag 300
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacctgaacaaacagatagctaagagtttaccaaactgtccttttgagcattcccggaag 500
Query: 301 ttatttagaccatgaaggctctgacataatctactgatggattcaagatctgaggtgaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttatttagaccatgaaggctctgacataatctactgatggattcaagatctgaggtgaca 560
Query: 361 ttcggggagcggggcttggtaggaggaccgaggtcacagggaatgtgttgtcctggttac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcggggagcggggcttggtaggaggaccgaggtcacagggaatgtgttgtcctggttac 620
Query: 421 accttgctgaggactcctcccgctgcctctctgcttcctggattcaggagagcagtcttc 480
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 621 accttgctgaggactcctcccgctgcctctctgcttcctggatccaggagagcagtcttc 680
Query: 481 ctctctctaccctt 494
||||||||||||||
Sbjct: 681 ctctctctaccctt 694
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space: 427856
Effective search space used: 427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
