Query= MSMg01no339_d08.b1 MSMg01no339_d08.b1 CHROMAT_FILE:
MSMg01no339_d08.b1 PHD_FILE: MSMg01no339_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:00 2005
(513 letters)
>mm_chr5_70046924_70047838
Length = 915
Score = 922 bits (477), Expect = 0.0
Identities = 509/527 (96%), Gaps = 16/527 (3%)
Strand = Plus / Plus
Query: 1 gctatacagaagaaaccctggtctc--aaaaaaaaaaaaaaaaaaaaa----------ga 48
||||||||| ||||||||| ||||| ||||||||||||||||||||| ||
Sbjct: 191 gctatacag-agaaaccct-gtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaga 248
Query: 49 attcgctccttataggtttcctattagctgtcctatacattagacatctgtagttttgct 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 attcgctccttataggtttcctattagctgtcctatacattagacatctgtagttttgct 308
Query: 109 cacagtttcagtaacagatttcatatgtttctctattcaggacattttttt--gtttgtt 166
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 309 cacagtttcagtaacagatttcatatgtttctctattcaggacatttttttttgtttgtt 368
Query: 167 tgtttcatttggggaagaaatacaagaaaagttctctttgaaatactctcatgttctcag 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tgtttcatttggggaagaaatacaagaaaagttctctttgaaatactctcatgttctcag 428
Query: 227 tcctcagccttattggtcaacaaacttgtacttcacttcatacacctttacacaaaagtc 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tcctcagccttattggtcaacaaacttgtacttcacttcatacacctttacacaaaagtc 488
Query: 287 attgttatactacaggatcggatttctactaattattttcatctagcaaagtaaccatat 346
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 489 attgttatactacaggatcggatttctactagttattttcatctagcaaagtaaccatat 548
Query: 347 gacaggagccatatagttggtttgacacccatattttagagaaaaactcatgcataaaca 406
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 tacaggagccatatagttggtttgacacccatattttagagaaaaactcatgcataaaca 608
Query: 407 atactaggaagtgaaatgattaagagtgctgatgatatagattcaaatgaaaatccacac 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 atactaggaagtgaaatgattaagagtgctgatgatatagattcaaatgaaaatccacac 668
Query: 467 taaactggagatggaatgaaatattttatagctatcatgagtttatc 513
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 taaactggagatggaatgaaatattttatagctatcatgagtttatc 715
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 915
Length adjustment: 10
Effective length of query: 503
Effective length of database: 905
Effective search space: 455215
Effective search space used: 455215
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no339_d08.g1 MSMg01no339_d08.g1 CHROMAT_FILE:
MSMg01no339_d08.g1 PHD_FILE: MSMg01no339_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:00 2005
(365 letters)
>mm_chr5_70233625_70234391
Length = 767
Score = 644 bits (333), Expect = 0.0
Identities = 358/367 (97%), Gaps = 2/367 (0%)
Strand = Plus / Minus
Query: 1 attgggaaaaaaatacataagtggttattagaagcggtggggagcagggagtggtgagtg 60
||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 567 attgggacaaaaatacataagtggttattagaagcagtggggagcagggagcggtgagtg 508
Query: 61 gctgttagtggtattgtattaagaaatgttataaagttggagagtggcaatggacaggga 120
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 507 gctgttagtggtattgtattaagaaatgttatagagttggagagtggcaatggacaggca 448
Query: 121 gcattataagtacactgaaaatgttgaattacacttttcagaaatatgaatagtttatct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gcattataagtacactgaaaatgttgaattacacttttcagaaatatgaatagtttatct 388
Query: 181 gaattgtatcacactttgaaaaaaa--tattcagttggaagagaaggtgtttgattacta 238
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 387 gaattgtatcacattttgaaaaaaaaatattcagttggaagagaaggtgtttgattacta 328
Query: 239 gtgtcctaactgatctacctagagcagtgaatcacagagtctgtctagccaggctgggct 298
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 327 gtgtcctaactgatctacctagagcagtgaatcacggagtctgtctagccaggctgggct 268
Query: 299 gtctacgacaaaattgtctgtgattcatgactcactttaagcgaaaagaaacactgcctt 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gtctacgacaaaattgtctgtgattcatgactcactttaagcgaaaagaaacactgcctt 208
Query: 359 tttcaaa 365
|||||||
Sbjct: 207 tttcaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 767
Length adjustment: 9
Effective length of query: 356
Effective length of database: 758
Effective search space: 269848
Effective search space used: 269848
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
