Query= MSMg01no339_e05.b1 MSMg01no339_e05.b1 CHROMAT_FILE:
MSMg01no339_e05.b1 PHD_FILE: MSMg01no339_e05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:03 2005
(516 letters)
>mm_chr5_126497602_126498514
Length = 913
Score = 832 bits (430), Expect = 0.0
Identities = 495/524 (94%), Gaps = 19/524 (3%)
Strand = Plus / Plus
Query: 5 gaattcctgacctctagatcagtgctagctttcagtgccacagatatgcagcttagtgaa 64
|||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 205 gaattcctgacccctagatcag---tagctttcagcgccacagatatgcagcttagtgaa 261
Query: 65 tgtgcccacttctgtaaattactcagaggaagaaaaaagtaacttcttttattctctatc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tgtgcccacttctgtaaattactcagaggaagaaaaaagtaacttcttttattctctatc 321
Query: 125 tcttagcacgctttccctatcctcttgggcttcccagatgatttgagtattcttaacttt 184
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tcttagcacgatttccctatcctcttgggcttcccagatgatttgagtattcttaacttt 381
Query: 185 tttttttctttttaagtccccattccagatgtgtggctgcctgctggtaagtgtccaact 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tttttttctttttaagtccccattccagatgtgtggctgcctgctggtaagtgtccaact 441
Query: 245 cccttgctggtttcacccaaacaggatggcctttgtcttcttgtcttctgttttcctcct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cccttgctggtttcacccaaacaggatggcctttgtcttcttgtcttctgttttcctcct 501
Query: 305 ccaggcagctgctgagatttatttatagcttgcctgccaggcacttcttcttcttctcct 364
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 502 ccaggcagctgctgagatttatttatagcttgcctgacaggcgcttcttcttcttctcct 561
Query: 365 tct-ccttc---cttctttcttcttccttcttccttcttccttcctccttcttccttctt 420
||| ||||| |||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 562 tcttccttcttccttcttccttcttccttcttccttcttccttcttccttcttccttctt 621
Query: 421 cct----ccttctcctcctcctcctcctcct-cctt---ctcctcctcctcctcctcctt 472
||| |||||| |||| || |||| || |||| ||||||||||||||||||||
Sbjct: 622 ccttcttccttct--tccttct--tccttcttccttttcctcctcctcctcctcctcctc 677
Query: 473 ctcctcctcctcctcctcctcctcctccttcttcttcttcttct 516
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ctcctcctcctcctcctcctcctcctccttcttcttcttcttct 721
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 94
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 913
Length adjustment: 10
Effective length of query: 506
Effective length of database: 903
Effective search space: 456918
Effective search space used: 456918
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no339_e05.g1 MSMg01no339_e05.g1 CHROMAT_FILE:
MSMg01no339_e05.g1 PHD_FILE: MSMg01no339_e05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:03 2005
(507 letters)
>mm_chr5_126637668_126638574
Length = 907
Score = 754 bits (390), Expect = 0.0
Identities = 390/390 (100%)
Strand = Plus / Minus
Query: 1 tcatgaacaaaagaaatagcttagaatcaatgcccatcagcaaagtagactgagaaacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tcatgaacaaaagaaatagcttagaatcaatgcccatcagcaaagtagactgagaaacag 331
Query: 61 tgttttcaaagtactttgtgactaagtactaagaagcaaatgacagtgacctgggtatca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tgttttcaaagtactttgtgactaagtactaagaagcaaatgacagtgacctgggtatca 271
Query: 121 aaaataacaggggtcactagctttccgaggaaatgagagctcatagaagcttagaagcac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 aaaataacaggggtcactagctttccgaggaaatgagagctcatagaagcttagaagcac 211
Query: 181 tcataattgtgctggggagatagctcagctggcaaaatgcatgtgggaaagcctaggggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 tcataattgtgctggggagatagctcagctggcaaaatgcatgtgggaaagcctaggggc 151
Query: 241 atgagttcaatccccagaacccacattttagagagctggtagaacatgcttgtcatctca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 atgagttcaatccccagaacccacattttagagagctggtagaacatgcttgtcatctca 91
Query: 301 accctgatgaggtggagacacgggggataccgggggataaccggtcagctagtctagctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90 accctgatgaggtggagacacgggggataccgggggataaccggtcagctagtctagctt 31
Query: 361 aattcagtgaattacagactagtgagaaac 390
||||||||||||||||||||||||||||||
Sbjct: 30 aattcagtgaattacagactagtgagaaac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space: 445809
Effective search space used: 445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
