Query= MSMg01no339_p18.b1 MSMg01no339_p18.b1 CHROMAT_FILE:
MSMg01no339_p18.b1 PHD_FILE: MSMg01no339_p18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:56 2005
(657 letters)
>mm_chr5_61216025_61217080
Length = 1056
Score = 1255 bits (649), Expect = 0.0
Identities = 652/653 (99%), Gaps = 1/653 (0%)
Strand = Plus / Plus
Query: 5 gaattcatctctactattgctccccttgatttttctactcttaccaaatgcagaactcat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatctctactattgctccccttgatttttctactcttaccaaatgcagaactcat 264
Query: 65 tccaaaacaaaaacaaaaacaaaaacaacaaaaaataatgttcttctacaatggatcttc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tccaaaacaaaaacaaaaacaaaaacaacaaaaaataatgttcttctacaatggatcttc 324
Query: 125 ttccctgcttctctaaaacaaacatgacaattctacacagtccttgtagagaagcctgtg 184
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 325 ttccctgcttctctaaaacaaacatgacaattctacacagtcct-gtagagaagcctgtg 383
Query: 185 agaagcctgtctgaacttgacagcctggcattgagactgtttccaagcgatcagactggc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agaagcctgtctgaacttgacagcctggcattgagactgtttccaagcgatcagactggc 443
Query: 245 tcaggttgacaattaaaattggccatcacagtggtcaataaatctttcttccactactta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcaggttgacaattaaaattggccatcacagtggtcaataaatctttcttccactactta 503
Query: 305 aaaattactactaagatttacttcagttattctttatggttacaaatgagagatctacag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aaaattactactaagatttacttcagttattctttatggttacaaatgagagatctacag 563
Query: 365 ttattcagataaagattttattgatatgattaatgtctgcatattctcacattttactgt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttattcagataaagattttattgatatgattaatgtctgcatattctcacattttactgt 623
Query: 425 ctttgtatatcagaaattcaactgtgaggcttcttagtatgcatttattttgcatattta 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctttgtatatcagaaattcaactgtgaggcttcttagtatgcatttattttgcatattta 683
Query: 485 tggttttcaaaaacaatttggggaattttgttttgaagaaccctggtctttgcaattctt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tggttttcaaaaacaatttggggaattttgttttgaagaaccctggtctttgcaattctt 743
Query: 545 ttttttttttctctgtatgtttatggagtccacaggtgatgtgagagttattatttagtt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ttttttttttctctgtatgtttatggagtccacaggtgatgtgagagttattatttagtt 803
Query: 605 attgccttataagtttcacttttctgataaacaacacctctgtttttgttaat 657
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 attgccttataagtttcacttttctgataaacaacacctctgtttttgttaat 856
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1056
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1046
Effective search space: 676762
Effective search space used: 676762
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no339_p18.g1 MSMg01no339_p18.g1 CHROMAT_FILE:
MSMg01no339_p18.g1 PHD_FILE: MSMg01no339_p18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:56 2005
(504 letters)
>mm_chr5_61259566_61260469
Length = 904
Score = 951 bits (492), Expect = 0.0
Identities = 501/504 (99%)
Strand = Plus / Minus
Query: 1 ttagaagagacgctcttgtaatggaccaggttgaattttcaactattgaaacaaggactg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 ttagaagagacgctcttgtaatggaccaggttgaattttcaactattgaaacaaggactg 645
Query: 61 atgaagtatgttcatcagtgctctgggtatgctgagtgtctttgtaaatggtggacaatt 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 644 atgaagtatgttcatcagtgctctgggtatgctgagtgtctttgtaaatggtggactatt 585
Query: 121 atctgaacagatcagttaaaaagataaattgataagaataatcattttgttatccagatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 atctgaacagatcagttaaaaagataaattgataagaataatcattttgttatccagatg 525
Query: 181 ttcatcaatctaccaaccaccaaagtttcttttctcatttaattttccacgatacccaca 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 ctcatcaatctaccaaccaccaaagtttcttttctcatttaattttccacgatacccaca 465
Query: 241 tgtttgtatgagtgacagagattaatggattgatcaaaagttatcccttttacatgcagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tgtttgtatgagtgacagagattaatggattgatcaaaagttatcccttttacatgcagg 405
Query: 301 tgcaaagcagatttcaaattatgcgtcatatgctttgctctgaggcaaactgtatcttca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 tgcaaagcagatttcaaattatgcgtcatatgctttgctctgaggcaaactgtatcttca 345
Query: 361 ttatcaatggtttgctcttcatgacaactgagctttctactgttttcttgaatgaaaatt 420
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ttatcagtggtttgctcttcatgacaactgagctttctactgttttcttgaatgaaaatt 285
Query: 421 gttcatagaatattgagatattggttttaacaaaaaataaagtattaccttattttattt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 gttcatagaatattgagatattggttttaacaaaaaataaagtattaccttattttattt 225
Query: 481 atatttaatggaaacccaattgaa 504
||||||||||||||||||||||||
Sbjct: 224 atatttaatggaaacccaattgaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space: 441636
Effective search space used: 441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
