NATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATTGTATTTACGATTAGAGGTCATCAGTTGGTTTTGATACAG
GAAGTGATGTAATATCATTCATTTATTTGAAGGGTTCCTCTAGCTACCTC
TCTGAGAATGGAGTCAAGTAGGATGAAGAGATGGTGTTTTAAAAAGATCA
AAATATCTATAAGGTGACTAGCTCAGAAATTCAAAATTGTCATAAAATGT
GGTGACCACAGGAGCTGGTATAGATACCACCATCACACCAGTTCATTTTT
CAAAAACTGATGGAAATATGATGGCTTGTACTAAAATTATAAAAGATTCC
AGATACAACTTAGAGTGATACTACAAGGACTTGCTGATGCAGTGATTGTA
GAAGGTGAAGAATCAAGAAATCAAGGCTGAGCTCTTTGGCTTAAGCACCT
GTATGGATGGTGACATTGAGAGTGATAATCTAATTAGATGAGAACTCTCC
ATGAACAAACATTTGGGTTTTTTTAGTCTTTTAAAAATTGTTTTTTATTA
ATCCTTTTTTCATTATTTATTCACTATACATCCTGATAGCATCTCTGTAC
CCTCCTTTCCTCCCAGTCTCACCCTTACAAATCCATCCCACCATTACCCT
GTTCCCTTCTCCTTAAGGAAGAGGAAGACCCCCTCAGTACCACCCCTCCC
TAAACATCAATTCAAATCACATCTTCTCCCTN

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATG
GCAGAGAAGCAACTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAAT
GCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTA
AGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGA
GGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTG
GAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGG
ATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGT
AAAAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGC
CAGAAGCTGGAAAGATCCCAGATGTCCCTCAACAGAGGAATGGATACAGA
AAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTACAAAGAAT
GAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCT
GAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGA
TAAGTGGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAAT
TTCCTAAACACATGAAACTCAAGAAAAATGAAGACG

Query= MSMg01no340_d10.b1 MSMg01no340_d10.b1 CHROMAT_FILE:
MSMg01no340_d10.b1 PHD_FILE: MSMg01no340_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:12 2005
         (559 letters)



>mm_chr5_4450450_4451408
          Length = 959

 Score = 1006 bits (520), Expect = 0.0
 Identities = 550/560 (98%), Gaps = 1/560 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttagaggtcatcagttggttttgatacaggaagtgatgtaatatcattcatttatttgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 ttagaggtcatcagttggttttgatacaggaagtgatgtaatatcattcatttatttgaa 521

                                                                       
Query: 61  gggttcctctagctacctctctgagaatggagtcaagtaggatgaagagatggtgtttta 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gggttcctctagctgcctctctgagaatggagtcaagtaggatgaagagatggtgtttta 461

                                                                       
Query: 121 aaaagatcaaaatatctataaggtgactagctcagaaattcaaaattgtcataaaatgtg 180
           ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 460 aaaagatcaaaatatctgtaaggtgactagctcagacattcaaaattgtcataaaatgtg 401

                                                                       
Query: 181 gtgaccacaggagctggtatagataccaccatcacaccagttcatttttcaaaaactgat 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 400 gtgaccacaggagctggtataggtaccaccatcacaccagttcatttttcaaaaactgat 341

                                                                       
Query: 241 ggaaatatgatggcttgtactaaaattataaaagattccagatacaacttagagtgatac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 340 ggaaatatgatggcttgtactaaaattataaaagattccagatacaacttagagtaatac 281

                                                                       
Query: 301 tacaaggacttgctgatgcagtgattgtagaaggtgaagaatcaagaaatcaaggctgag 360
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 280 tacaaggacttgctgatgcagtcattgtagaaggtgaagaatcaagaaatcaaggctgag 221

                                                                       
Query: 361 ctctttggcttaagcacctgtatggatggtgacattgagagtgataatctaattagatga 420
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 220 ctctttggcttaagcacctgtatggatggtgacattgagagtggtaatctaattagatga 161

                                                                       
Query: 421 gaactctccatgaacaaacatttgggtttttttagtcttttaaaaattgttttttattaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 gaactctccatgaacaaacatttgggtttttttagtcttttaaaaattgttttttattaa 101

                                                                       
Query: 481 tccttttttca-ttatttattcactatacatcctgatagcatctctgtaccctcctttcc 539
           ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 100 tccttttttcatttatttattcactatacatcctgatagcatctctgtcccctcctttcc 41

                               
Query: 540 tcccagtctcacccttacaa 559
           |||||||| |||||||||||
Sbjct: 40  tcccagtcccacccttacaa 21


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)