NAACTTATTACTCGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTCAGATCTTCAAAGAAGACCTAATACCAAAACTTCTCAAA
CTGTTCCATAAAATAGAAACAGAAGGAACACTACCCAATTATTTCTATGA
AGTCACAGCTACATTGACATCTAAACCACAAAAAGACCCAACAAAGAAAG
AGAACTACAGACCAATTTCCCTTATGAATATCAATGCAAAAATACTGGAT
AAAATTCTCACAAACCGAATTCAAGAACATATCAAAATGACCATCCAACA
TGATCAAGTAGGCTTCATCCCAGGAATGCAGGCATGGTTCTATGTATGGA
AATCCATCAATGTAATCCACCATATAAACAAACTCAAAGAATAAAACCAA
ATAATCTTCTCATTAGATACTGAAAAAGCCCTTGACAAAATACGACACCA
ATTCATGTTAAAAGTTTTGGAGAGACCAGGAATTCAAGTCCATAACTAAA
TATAATAAAAGCAATATATAGCAAACCAATAGCCAACATCAAACTGAATG
GTTAGAAATTCGAAGCAATCCCTTTAAAATCAGGGACAAGACAAGGCTGC
CTACTCTCTCCCTACCTATTCAATATAGTACTCATAAGTCCTAGCCAGAA
CAATTAGACAACAAAAGGAGATCAATGGATACAAATTGATAAGGAGGAAG
TCAAGATATCACTATN

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGGCATCGAGTGAGGTGAGC
ATGATGATGGATGGGCACCTGGTTTGAGCCCAGTTTGGTGTCTCAGGGGC
TTCCTGGAGCTAATGCTTCCCATGGGGTTGTACCACAGTGGCTGTGGCTG
CACTTCTGGCATCCAGGGCAGTGCCACTGGCCACATGTGGCTGCTGCATC
CTTCAAATGTGGTTGCAACAAGAAGGCATATAAAATTTTGTTTAATTTTA
ATTGATACAGATATAAATAGAAATATTGGACTAAGGGCTACACTGTGGGA
CAGCTCAGACTGGTGTCCTCCAGGCTGGTGTGATCTGCTCAGAACAGGGA
ACACAAGGATGGGAAGTAAAATATAATCTTTGCGAGGTGGTGACACACAC
CTTTAATCCTGGCACTCAGTAAGGAGAGGCCGGCAGATCTCTGAGTTCCA
GGCCATCCTGGTCTACAAAGTGGGTTCTGAGACAGCCAGGGCTACACAGA
GAACTCGTCTTGGAAAACAAAAACAAAAACAAAAAAGAGAGCAAGCTTGC
TAGTTAAGAACATATACTGCACAGGACCCAGCACCCACACTGGGTGCTCA
TAACAGTGTATACCCCAGGTCCAGGGGATCCAATGCCCTTTTATGGCCTC
TGCAGGCACTGGTACATATGTGTA

Query= MSMg01no340_d13.g1 MSMg01no340_d13.g1 CHROMAT_FILE:
MSMg01no340_d13.g1 PHD_FILE: MSMg01no340_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:12 2005
         (593 letters)



>mm_chr5_25343502_25344494
          Length = 993

 Score = 1104 bits (571), Expect = 0.0
 Identities = 588/595 (98%), Gaps = 4/595 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtggcatcgagtgaggtgagcatgatga--tggatgggcacctggtttgagcccagttt 58
           |||||||||||||||||||||||||||||  |  ||||||||| ||||||||||||||||
Sbjct: 201 agtggcatcgagtgaggtgagcatgatgactt--atgggcacccggtttgagcccagttt 258

                                                                       
Query: 59  ggtgtctcaggggcttcctggagctaatgcttcccatggggttgtaccacagtggctgtg 118
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ggtgcctcaggggcttcctggagctaatgcttcccatggggttgtaccacagtggctgtg 318

                                                                       
Query: 119 gctgcacttctggcatccagggcagtgccactggccacatgtggctgctgcatccttcaa 178
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gctgcacttctggcatccacggcagtgccactggccacatgtggctgctgcatccttcaa 378

                                                                       
Query: 179 atgtggttgcaacaagaaggcatataaaattttgtttaattttaattgatacagatataa 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 atgtggttgcaacaagaaggcatataaaattttgtttaattttaattgatacagatataa 438

                                                                       
Query: 239 atagaaatattggactaagggctacactgtgggacagctcagactggtgtcctccaggct 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 atagaaatattggactaagggctacactgtgggacagctcagactggtgtcctccaggct 498

                                                                       
Query: 299 ggtgtgatctgctcagaacagggaacacaaggatgggaagtaaaatataatctttgcgag 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ggtgtgatctgctcagaacagggaacacaaggatgggaagtaaaatataatctttgcgag 558

                                                                       
Query: 359 gtggtgacacacacctttaatcctggcactcagtaaggagaggccggcagatctctgagt 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gtggtgacacacacctttaatcctggcactcagtaaggagaggccggcagatctctgagt 618

                                                                       
Query: 419 tccaggccatcctggtctacaaagtgggttctgagacagccagggctacacagagaactc 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tccaggccatcctggtctacaaagtgggttctgagacagccagggctacacagagaactc 678

                                                                       
Query: 479 gtcttggaaaacaaaaacaaaaacaaaaaagagagcaagcttgctagttaagaacatata 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gtcttggaaaacaaaaacaaaaacaaaaaagagagcaagcttgctagttaagaacatata 738

                                                                  
Query: 539 ctgcacaggacccagcacccacactgggtgctcataacagtgtataccccaggtc 593
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ctgcacaggacccagcacccacactgggtgctcataacagtgtataccccaggtc 793


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space:   573089
Effective search space used:   573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)