BAC Information

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BAC

Clone NameMSMg01-340E22
Chromosome5 (Build37)
Map Location 115,226,286 - 115,226,732
singlet/doubletsinglet
Overlap geneAnkrd13a
Upstream geneIscu, Tmem119, Selplg, Coro1c, Ssh1, Dao1, Svop, Usp30, Alkbh2, Ung, Acacb, Foxn4, Myo1h, Kctd10, Ube3b, Mmab, Mvk, BC057022, Trpv4, Gltp, Tchp, Git2, 4930515G01Rik
Downstream gene1500011B03Rik, 2610524H06Rik, LOC664895, 4930519G04Rik, Oasl2, Oasl1, 2210016L21Rik, Tcf1, Sppl3, Acads, AA407659, 2410014A08Rik, Cabp1, Pop5, Rnf10, Coq5, Dynll1, Sfrs9, 2010003O18Rik, Triap1, Cox6a1, Msi1, Pla2g1b, Sirt4, LOC638021, Pxn, Arbp, Gcn1l1, LOC100042199, Rab35, Ccdc64
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-340E22.T7 (MSMg01no340_e22.b1)MSMg01-340E22.TJ (MSMg01no340_e22.g1)
ACCAG454378AG454379
length762750
length of high quality
(start - end)		451 (52 - 502)397 (79 - 475)
definitionCHROMAT_FILE: MSMg01no340_e22.b1 PHD_FILE: MSMg01no340_e22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:18 2005CHROMAT_FILE: MSMg01no340_e22.g1 PHD_FILE: MSMg01no340_e22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTTCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCACTGTGTAGCTCAGGCTGGCTTCTAACTTGGGGGAGGGG
TAGCCTGCTGAAAGGCAGAGCCGCCCACCAGGAATGAGACACCTGCCATT
AATGGCACTGCAGTCATTTCATTAGGCACGGGTGCCCTGAGTTGCTCTCT
AGCCTGTAGCAAATGAGATAAGGATTTATAATTACTCCCAAAATCCGCCA
TAATTGTTACGGTTTGGCTTCATTCATTCGTCTTAGCCAGTGTGTCAGAG
CCTTGCTTTTGAATGACTTAACCACTGACTCAGTAATTGTTGCGAACCCT
TGGTTCTTTTGATTGGTAAACATTGGGCCAGCCCCACATCGAAGCGCTGT
TGGAACGGTTCTAAGTGTTGGTTTGCAGCTTGCCATATATATATATATTT
TTAGTTGTATGGGCAGCATGGGAAGTCAGAAGTGGCATTTAAAAAAAGGA
TTCCATGGCGGGTGTGGCGGTGTACACGGGTTACCCAAGACACTCAGGAA
GTTGAAGCACGAAGATTTGTAGGCTAGCCTGGGGAACTTGGTGAGGATCT
GTCCGAAAATAAATAAAAAGGATGAAAATGTGTGATCCNCAAGGGCCCCA
CCCTTTTTCCTTTGTGGGGAGGCCTTGGGTTTCATCCTCCTGGTGGGGGG
GGGGCGGGAAGGTAATCACCAACAACAAAATTTTTTAAAAACATTGGTTT
TTTAATAGGGCA

NNNCCGATGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGGGGCTTAAAGATGTACTG
AATTCAGGTTTCCCTCTGGACAGTTTCTAAAACATACACACACATGCTTG
CATGCATAAGTATATACACATGTATGCACACACACACAGGGACAATCATA
TACATGCATACACACACAGACACACATTCATGCACACATGCACGCACACA
CACACTGACACACAAGCACAAGCCTTCCCCACCCCCAGACACAAAGAAAC
ATGCACACACACACATACACAGGCAGGTACATACAAATAGACTTACACAG
ACACACATGCACACACACATGTGCACATACAAACACACAGGCACAGCACA
CACACATGCACACAGACACACAGGCAGGCATACACACACACACACACACA
CACACACACACAGGCACAAGCAGAAGCACGTGCACACACACACACATATA
CACCCACAGACAAGCAACCACACATGCTCCATACACGAACCACCACGCAC
GCATGGCAGGAACTCAGTATGCCAGCTAAACTCAACTCAATGTATCAAGA
TGATTTTGAATTCCAACCTCCTGCCTTTGCCGCAGTGGGGAGGTTAAAAA
CCGCCCCCCAAACCGATCCTTTGTTTTGGGCCGAATTTTGAAAAAAGGTT
TTTTGGTACCAAAAAACCAAAAACCCCCTGAAACAAGGGGCCCAAAACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no340_e22.b1 MSMg01no340_e22.b1 CHROMAT_FILE:
MSMg01no340_e22.b1 PHD_FILE: MSMg01no340_e22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:18 2005
         (451 letters)



>mm_chr5_115226082_115226932
          Length = 851

 Score =  849 bits (439), Expect = 0.0
 Identities = 445/447 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactgtgtagctcaggctggcttctaacttgggggaggggtagcctgctgaaagg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactgtgtagctcaggctggcttctaacttgggggaggggtagcctgctgaaagg 264

                                                                       
Query: 65  cagagccgcccaccaggaatgagacacctgccattaatggcactgcagtcatttcattag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cagagccgcccaccaggaatgagacacctgccattaatggcactgcagtcatttcattag 324

                                                                       
Query: 125 gcacgggtgccctgagttgctctctagcctgtagcaaatgagataaggatttataattac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcacgggtgccctgagttgctctctagcctgtagcaaatgagataaggatttataattac 384

                                                                       
Query: 185 tcccaaaatccgccataattgttacggtttggcttcattcattcgtcttagccagtgtgt 244
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcccgaaatccgccataattgttacggtttggcttcattcattcgtcttagccagtgtgt 444

                                                                       
Query: 245 cagagccttgcttttgaatgacttaaccactgactcagtaattgttgcgaacccttggtt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cagagccttgcttttgaatgacttaaccactgactcagtaattgttgcgaacccttggtt 504

                                                                       
Query: 305 cttttgattggtaaacattgggccagccccacatcgaagcgctgttggaacggttctaag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cttttgattggtaaacattgggccagccccacatcgaagcgctgttggaacggttctaag 564

                                                                       
Query: 365 tgttggtttgcagcttgccatatatatatatatttttagttgtatgggcagcatgggaag 424
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 565 tgttggtttgcagcttgccatatatatatatatatttagttgtatgggcagcatgggaag 624

                                      
Query: 425 tcagaagtggcatttaaaaaaaggatt 451
           |||||||||||||||||||||||||||
Sbjct: 625 tcagaagtggcatttaaaaaaaggatt 651


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space:   370881
Effective search space used:   370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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