ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TAAATGTGCTTCACATTAGAATTTGGATTTTGAATAAAAGGTGTCTAGTA
TACGTGTCTTGAATATTTTAATCAGAGATGTACTTTGTATTACAGTAGAA
AAGTAAACTTTTTCTGCCAATATTTGTTATAAGTATATTTCACACACATC
CTTTAGAAGCCAGTAGCATCAGTAATTTTCCAATTTCTTATAATTCAAAT
ATCAAATATTTATCAATGATATTTAATCAAACTAGTAAGTATTACTCAGT
GACACAGAAATTAATTCAACAATTTATATTACCTTATTTTCTTTAAGAGC
AATTATACTAATAAAAATTCTAAATTGTCATAGTAAATCAATTATATCAT
TAAGGTTGTCATGCAGAGCAAACTATGAATCGCAGTTTACTACTATTGCT
CTGAAGATTATTGAATGATAGAGACCAATGAATATATTACTTAATTACTT
ATGTGACCACTTTTATTTTTTCATAAATAACTGTGAATGATAATTAGTCT
ACTGGTAACTCAGAGATTGGCCATTAAGCTTTTATTAAGTCATAATCATG
ACTTCATAATAATGTCTTGCATTTTTTACCAGTTGCAGCTTATATATCAG
AGCTTAGACATAATGATTTAATCATCTTTATTACTTCTGATCACACTTCT
AACTTCAATTCTCTTGTTT

NGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTGTTACATTATTTTAACACTTC
TGTATAAAAGGAATTTAGTTATTAGTATAAATTTAAACAGATTATTTCCT
TACACTATTCTTGGGCATATACTCAAAGGAATTTATGTTTTAATAAAGAG
ATACTTGTTCATCCATGTTCTTTCATGCTCTATTAATAATGGATAGAAAT
TGGAAATGATCCAGATGTCAATCATCTGATACATGGATAGTGAAAATGGG
ATACATGGACACAGTACAACACAATATATAAAAACAAGGAACTTAAGTGG
AGTAACCGTATAACTGGGGAGACAATGCTTCATCTACACTTCTTATGCTA
CAAGGAAAATCCCAGTACTAAGAATAGGTCACACCTTGTTGAATCACTGC
CCAAAAGAGTCCCACAGCACTTTCTAATATAACATGCCTTTGTCAAGGTT
ATTGGTTCCCCTCAATAGTTTGATAGTAAGGTACTTTTGTACAAAAAAAA
TAATTACTACTAATATCAAACATGAAGAAATCAAACTAATATCCAACTAG
AAGCTTCATTCCTTCTGATCACGTTTTATGGTGCTCCCTCAGAGGAGATC
ACACAAACTCCTTAGCATGTATCTACTAGTACATGAAAACATATAAAAAC
TAAATACAGACTGAAAAAGTTGTACTCTTTACACACACAN

Query= MSMg01no340_k09.b1 MSMg01no340_k09.b1 CHROMAT_FILE:
MSMg01no340_k09.b1 PHD_FILE: MSMg01no340_k09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:42 2005
         (608 letters)



>mm_chr5_80191220_80192229
          Length = 1010

 Score = 1135 bits (587), Expect = 0.0
 Identities = 602/607 (99%), Gaps = 2/607 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaatt-aaatgtgcttcacattagaatttggattttgaataaaaggtgtctagtatacg 62
           |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaaatgtgcttcatattagaatttggattttgaataaaaggtgtctagtatacg 263

                                                                       
Query: 63  tgtcttgaatattttaatcagagatgtactttgtattacagtagaaaagtaaactttttc 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgtcttgaatattttaatcagagatgtactttgtattacagtagaaaagtaaactttttc 323

                                                                       
Query: 123 tgccaatatttgttataagtatatttcacacacatcctttagaagccagtagcatcagta 182
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgccaatatttgttataagtgtatttcacacacatcctttagaagccagtagcatcagta 383

                                                                       
Query: 183 attttccaatttcttataattcaaatatcaaatatttatcaatgatatttaatcaaacta 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 attttccaatttcttataattcaaatatcaaatatttatcaatgatatttaatcaaacta 443

                                                                       
Query: 243 gtaagtattactcagtgacacagaaattaattcaacaatttatattaccttattttcttt 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtaagtattactcagtgacacagaaattaattcaacaatttatattaccttattttcttt 503

                                                                       
Query: 303 aagagcaattatactaataaaaa-ttctaaattgtcatagtaaatcaattatatcattaa 361
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 504 aagagcaattatactaataaaaaattctaaattgtcatagtaaatcaattatatcattaa 563

                                                                       
Query: 362 ggttgtcatgcagagcaaactatgaatcgcagtttactactattgctctgaagattattg 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ggttgtcatgcagagcaaactatgaatcgcagtttactactattgctctgaagattattg 623

                                                                       
Query: 422 aatgatagagaccaatgaatatattacttaattacttatgtgaccacttttattttttca 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aatgatagagaccaatgaatatattacttaattacttatgtgaccacttttattttttca 683

                                                                       
Query: 482 taaataactgtgaatgataattagtctactggtaactcagagattggccattaagctttt 541
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 684 taaataactgtgaatgataattagtctactggtaactcagagattggccattaacctttt 743

                                                                       
Query: 542 attaagtcataatcatgacttcataataatgtcttgcattttttaccagttgcagcttat 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 attaagtcataatcatgacttcataataatgtcttgcattttttaccagttgcagcttat 803

                  
Query: 602 atatcag 608
           |||||||
Sbjct: 804 atatcag 810


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1010
Length adjustment: 10
Effective length of query: 598
Effective length of database: 1000
Effective search space:   598000
Effective search space used:   598000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)