Query= MSMg01no340_o08.b1 MSMg01no340_o08.b1 CHROMAT_FILE:
MSMg01no340_o08.b1 PHD_FILE: MSMg01no340_o08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:00 2005
(596 letters)
>mm_chr5_83004743_83005738
Length = 996
Score = 1089 bits (563), Expect = 0.0
Identities = 577/582 (99%)
Strand = Plus / Minus
Query: 15 caatatttccagatctttctcttaaaatcattgtcattgttcttcagtgatattccctaa 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 996 caatatttccagatctttctcttaaaatcattgtcattgttcttcagtgatattccctaa 937
Query: 75 ccctttggggagggaaaactttgttatctcccttccttccccctttctctgtctctttgt 134
||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct: 936 ccctttggggaaggaaaactttgttctctcccttccttccccctttctctgtctctctgt 877
Query: 135 ctttctcacatctctctctctcccccctctctctacctctgcctctatccctatctttat 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 ctttctcacatctctctctctcccccctctctctacctctgcctctatccctatctttat 817
Query: 195 ctatatttctatctctatctgtcctacttatggctaagcactccacaacctgatttatct 254
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 816 ctatatttctatctctatctgtcctacttatggctaagcactccacaacctgacttatct 757
Query: 255 gttatagatacccactagtaatatcaatatgcaaaacaggcaatctaaaaactattgccc 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 gttatagatacccactagtaatatcaatatgcaaaacaggcaatctaaaaactattgccc 697
Query: 315 tcaaccttttcattttcttagtctccctacttattcaataatttttgtttagtttgtaac 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 tcaaccttttcattttcttagtctccctacttattcaataatttttgtttagtttgtaac 637
Query: 375 agtctttaaactataatacaatatataactacattatgcttaattataacatttataaaa 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 agtctttaaactataatacaatatataactacattatgcttaattataacatttataaaa 577
Query: 435 acatagataagaaatatgattttagggaaattaggtgacatttaaatctagttcatatct 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 acatagataagaaatatgattttagggaaattaggtgacatttaaatctagttcatatct 517
Query: 495 canatgatcataatccatatgcccaaaatagtaattaataagtaattatgagaagtatag 554
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 caaatgatcataatccatatgcccaaaatagtaattaataagtaattatgagaagtatag 457
Query: 555 tccatggttgtaacttactagtacttacaaggtaactgacag 596
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tccatggttgtaacttactagtacttacaaggtaactgacag 415
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space: 577796
Effective search space used: 577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no340_o08.g1 MSMg01no340_o08.g1 CHROMAT_FILE:
MSMg01no340_o08.g1 PHD_FILE: MSMg01no340_o08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:00 2005
(495 letters)
>mm_chr5_82840253_82841147
Length = 895
Score = 866 bits (448), Expect = 0.0
Identities = 485/500 (97%), Gaps = 5/500 (1%)
Strand = Plus / Plus
Query: 1 tcacctgaggaataccgaatggctgagaagcacctgaaaaaaatgttcaacatccttaat 60
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 196 tcacctgaggaataccgaatggcagagaagcacctgaaaaaaatgttcagcatccttaat 255
Query: 61 catcagggaactgcaaatcaaaacaaccctgtgattccacctcacaccagttagaatggc 120
|||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 256 catcagggaaatgcaaatcaaaacaaccctgggattccacctcacaccagtcagaatggc 315
Query: 121 taagatcaaaaattcaggtgacggcagatgctggggaggatgtggagaaagaggaacact 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 316 taagatcaaaaattcaggtgacagcagatgctggggaggatgtggagaaagaggaacact 375
Query: 181 ccttcattgttggtgggattgcaagcttgtacaaccactctggaaatcagtctggcggtt 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 376 ccttcattgttggtgggattgcaagcttgtacaaccactctggaaatcagtctggcagtt 435
Query: 241 cctcagaaaattggacatagtactaccggaggatccagcaatacctctcctgggcatata 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 436 cctcagaaaattggacatagtactactggaggatccagcaatacctctcctgggcatata 495
Query: 301 tccagaagatgtcccaaccggtaagaaagctttttttttttttt-----aatcttacatt 355
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 496 tccagaagatgtcccaaccggtaagaaagctttttttttttttttttttaatcttacatt 555
Query: 356 gttttatatatgagtttgcttttattgttgaggacattaagttttagcaacataatgtgg 415
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 556 gttttatatatgagtttgcttttattgttgagaacattaagttttagcaacataatgtgg 615
Query: 416 ttgttagtggatgtctaaatgtgttagttcaacaaaaataagtatctattctggtaaaat 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ttgttagtggatgtctaaatgtgttagttcaacaaaaataagtatctattctggtaaaat 675
Query: 476 agcttgcagttatctgttac 495
|||||||||||| |||||||
Sbjct: 676 agcttgcagttaactgttac 695
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space: 429225
Effective search space used: 429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
