CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATCACTAGGGTCAACTTCATAGATTACTGAGTTTCTATGTCACTAG
GCTTCTATCTTGTCCCTCAAATGCCCCCATATTCAGTTGTCTCTCCTAGT
TCTCTTTGTCCAGCCCCAAACATGATCCCTCAGGTTCCCATCTCTACCTG
TTTCCAGTACACCTGCAAAATCTATTCTATTTCACTTTTCAGGGATATCC
ATGCATCCTCCTTTGAGTCTTTCCTGTAATTTAGCCTCTCTTGGTCTGCA
GGTTAAAGCATTGAAGCTAATGTCCACTTATAAGTGATTACATACCATGT
TTAACTTACTGGGTCTTTATTTAGAATGATCTTTTCTACTTCCATCCATT
TGCCTGAAAACTTCATCATGATACATTTTTTAACAGCTGATAAAATGCAC
TTGTGTAAATGCACCACATATTCTTTATCTACTCTTTTGTTGAGAGACGT
CTAGGTTGTTTCTGGCTATTAGGAATAAAGCTGCTGTGAACACAATTAAA
GATGTATCCCTGAAGGAGGATGGCTCATCCATTGTGTACATTTCCAGGAG
TATTATAGCTGTATAAATTGACTCCCAATTTTCTGAGAATCAACTGTATT
GACTTCCAAAGCCTATATACAAGTTTGCACTCCCAATCAGCAATGGAAAA
AATGTTCCTATTGCCTCACATTTTTACTACTATGN

CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTATAATTTGTTGCAATAGTGTCATAAAA
TTAGTCCTGGCTCATGGGTATTTGAGTGGCAATCATTTTTCTTAAACTTT
AAATAAACAATTAGATCATTTTATTTCCAAAGTTTAATATCAATTATATT
AATGCATGACCTACAAAACAATTGAACTTCCATCATCCTAAACTGAAACC
CACTGTTCAAATAATGTAATTCAGAACCTGCATACAATGACAACTCTGGC
AGTTTGTGAAGTGCACTATGCTATATTCTGTAACATCTGTGAACTAAAAC
CATGCTAAATACAATGGTGCTAATAAAATTCTAATTTAAATAAAATATTT
ACATCAGAAATAAATTATACTGTAATTCAGGCATATCATATATCGTATAT
ACAGTATACACACACACAAATGTGTATATCTATATATATATATGCTAAAG
AAGTTCTTATACCCCTCAATAGTACTTCCAGACCAACATATCTCATTCTT
AAACTCCACTCACATGTTTCCTTCATTCACATTAATTTATAATGAATATA
TTCACTTGTCTCTATACCAATTTTTCTATTCCTTTCCATGAAAAATTGAA
ATTTTTCTGATGATTTTTGTCTTACCATTTTTTACAGAAAAAGTATTAGG
CACAGTTTTATTTTAGTACTTTTTAAATTTTGTA

Query= MSMg01no340_p05.g1 MSMg01no340_p05.g1 CHROMAT_FILE:
MSMg01no340_p05.g1 PHD_FILE: MSMg01no340_p05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:04 2005
         (588 letters)



>mm_chr5_10514431_10515418
          Length = 988

 Score =  886 bits (458), Expect = 0.0
 Identities = 482/498 (96%), Gaps = 14/498 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tataatttgttgcaatagtgtcataaaattagtcctggctcatgggtatttgagtggcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tataatttgttgcaatagtgtcataaaattagtcctggctcatgggtatttgagtggcaa 439

                                                                       
Query: 61  tcatttttcttaaactttaaataaacaattagatcattttatttccaaagtttaatatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tcatttttcttaaactttaaataaacaattagatcattttatttccaaagtttaatatca 379

                                                                       
Query: 121 attatattaatgcatgacctacaaaacaattgaacttccatcatcctaaactgaaaccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 attatattaatgcatgacctacaaaacaattgaacttccatcatcctaaactgaaaccca 319

                                                                       
Query: 181 ctgttcaaataatgtaattcagaacctgcatacaatgacaactctggcagtttgtgaagt 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 318 ctgttcaaataatgtaattcagaacctgcatacaatgacaactctgccagtttgtgaagt 259

                                                                       
Query: 241 gcactatgctatattctgtaacatctgtgaactaaaaccatgctaaatacaatggtgcta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gcactatgctatattctgtaacatctgtgaactaaaaccatgctaaatacaatggtgcta 199

                                                                       
Query: 301 ataaaattctaatttaaataaaatatttacatcagaaataaattatactgtaattcaggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 ataaaattctaatttaaataaaatatttacatcagaaataaattatactgtaattcaggc 139

                                                                       
Query: 361 atatcatatatcgtatatacagtat--acacacacacaaatgtg------------tata 406
           |||||||||||||||||||||||||  |||||||||||||||||            ||||
Sbjct: 138 atatcatatatcgtatatacagtatacacacacacacaaatgtgtgtgcatatatatata 79

                                                                       
Query: 407 tctatatatatatatgctaaagaagttcttatacccctcaatagtacttccagaccaaca 466
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78  tatatatatatatatgctaaagaagttcttatacccctcaatagtacttccagaccaaca 19

                             
Query: 467 tatctcattcttaaactc 484
           ||||||||||||||||||
Sbjct: 18  tatctcattcttaaactc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space:   565284
Effective search space used:   565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)