NCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGCCCTGATTGAGTTCGATTATTTCCTGCTGTCTACTCCTTTT
GGGTGAATTTGCTTCCTTTAGTTCTAGAGCTTCTAGGTGTACTGTCAGTC
TGCTAGTATATGCTCTCTCTAGTTTCTTTTTGGAGGCAGTCAGGGCAATG
AGTTTTCCTCTTAGGACTGCTTTCATTGTGTCCCATACGTTTGGGTATGT
TGTGGCTTCATATTTCATTAAACTCTAAAAAGTCTTTAATTTCTTTCTTT
ATTTCATCCTTGACCAAGGAATCATTGAATAGAGTGTTGTTCAGTTTCCA
TGTGAATGTTGGTTTTCTATTATTTATGTTGTTGTTGAAGATGAGCCTTA
GTTCATAGTCATCAAATAGGATGCATGGGATAATTTCAATATTTTTGTAT
CTGTTGAGTATGGTCAATTTTGGAGGAGGTACCATGTGGCGCTGAGAAGA
AGGTATATTCTTTTGTTTTAGGATAAAATTTTCTGTAGATATCAATTAAA
TCCATTTGTTTCATAACTTCTGTTACTGTCCATGTGTCTCTGTTTTGTTT
CTGTTTCCAGGATCTGTCCATTGGTAAGAGAGGGGTGTTGAAGTCTCCCA
CTATCATTGTGTGAGGTGCAATGTGTGCTTTGAGCTTTACTAAAGTTTCT
TTAATAAATGTGGCTTCCCCTTTATTCGGAGCATAGATATTCA

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCGAATGTCATGGGGTAGTAAATGTACT
TGTGTTGATCCTTTGAGATGGAGATATCTTTACCAGTTCAAGTGTTCAAC
ATGCCTTAAATTAGATGCCGAAACCACTTTCTTCTATCTGGAGTAAACGT
TCCTAAATGATTGAGATCAAGTTTGTCTTATGGCTGTAAAAAAAGTGATC
ACATAAACATATCAGTAGCAGTGACAGTAGTGACAGAAGATACTGTCATA
GTTTGGTGTAAGAACACTTCCGGTGGAGAGAGGTGTGAGCCTTGCGATAA
AGAGGCGGGTGGCTAAAGCTGGATCTCGGTGCTTATCCCTGGCCTCAGAC
CTTCAGAGTCCTGAGGAGTCACTCCGTCACTTAGCAGTTCTGAGTGAGCT
CTAGGAAACGGAGGAAAGAAGGCGTCTCAAAGGCTCCTTCTCCAAGAGTT
TACAGTCTAGTGAGTTACAAGACATTTGGAAACAATTGACATGATGCAGG
CATGGGAAGACAGAGACTTACATCCTACCTATGAGCGTTGAGAAAAAATG
CTGACCTGTACCGTGTGGTCAGTGAGTACTTTCAGAGGAGAATGCAGGCT
GGGCCTCCTGAGCAGGACTGTTCATAGTAAAGTCAGAAGCTGAGAGTTGG
GAAATGGATAGAAGACCTGTGTCCATCAAAGAACCAGTGGTTN

Query= MSMg01no340_p18.g1 MSMg01no340_p18.g1 CHROMAT_FILE:
MSMg01no340_p18.g1 PHD_FILE: MSMg01no340_p18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:06 2005
         (563 letters)



>mm_chr5_4361280_4362242
          Length = 963

 Score =  951 bits (492), Expect = 0.0
 Identities = 544/566 (96%), Gaps = 13/566 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgaatgtcatggggtagtaaatgtacttgtgttgatcctttgagatggagatatctttac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cgaatgtcatggggtagtaaatgtacttgtgttgatcctttgagatggagatatctttac 260

                                                                       
Query: 61  cagttcaagtgttcaacatgccttaaattagatgccgaaaccactttcttctatctggag 120
           ||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 261 cagttcaagtgctcaacatgccttaaattagatacagaaaccactttcttctatctggag 320

                                                                       
Query: 121 taaac-gttcctaaatgattgagatcaagtttgtcttatggctgtaaaaaaa--gtgatc 177
           ||| | ||      ||  |||| | || ||||||||||||||||||||||||  ||||||
Sbjct: 321 taaccagt------at--ttgatacca-gtttgtcttatggctgtaaaaaaaaagtgatc 371

                                                                       
Query: 178 acataaacatatcagtagcagtgacagtagtgacagaagatactgtcatagtttggtgta 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 acataaacatatcagtagcagtgacagtagtgacagaagatactgtcatagtttggtgta 431

                                                                       
Query: 238 agaacacttccggtggagagaggtgtgagccttgcgataaagaggcgggtggctaaagct 297
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 432 agaacacttccggtggagagaggtgtgagccttgcgataaagaggcgg-tggctaaagct 490

                                                                       
Query: 298 ggatctcggtgcttatccctggcctcagaccttcagagtcctgaggagtcactccgtcac 357
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 491 ggatctcggtgcttatccctggcctcagaccttcagagtcctgaggagtcactcagtcac 550

                                                                       
Query: 358 ttagcagttctgagtgagctctaggaaacggaggaaagaaggcgtctcaaaggctccttc 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ttagcagttctgagtgagctctaggaaacggaggaaagaaggcgtctcaaaggctccttc 610

                                                                       
Query: 418 tccaagagtttacagtctagtgagttacaagacatttggaaacaattgacatgatgcagg 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tccaagagtttacagtctagtgagttacaagacatttggaaacaattgacatgatgcagg 670

                                                                       
Query: 478 catgggaagacagagacttacatcctacctatgagcgttgagaaaaaatgctgacctgta 537
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 671 catgggaagacagagacttacatcctacctatgagagttgagaaaaaatgctgacctgta 730

                                     
Query: 538 ccgtgtggtcagtgagtactttcaga 563
           | ||||||||||||||||||||||||
Sbjct: 731 ctgtgtggtcagtgagtactttcaga 756


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space:   527009
Effective search space used:   527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)