Query= MSMg01no340_p20.b1 MSMg01no340_p20.b1 CHROMAT_FILE:
MSMg01no340_p20.b1 PHD_FILE: MSMg01no340_p20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:07 2005
(515 letters)
>mm_chr5_9477623_9478540
Length = 918
Score = 949 bits (491), Expect = 0.0
Identities = 507/514 (98%), Gaps = 3/514 (0%)
Strand = Plus / Minus
Query: 5 gaattccccctcttaatttaaagagagcgaaggaaggtaaggagaaatgagagggtgaga 64
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 644 gaattccccctcttaatttaaagagagcgaaggaaagtaaggagaaatgagagggtgaga 585
Query: 65 gaaaagaagcaggaaaagagagagggaagaagggaaccacagaaatcagccatcaacccc 124
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 584 gaaaagaagcaggaaaagagagagggaagaagggaactacagaaatcagccatcaacccc 525
Query: 125 aagtgaaaacaaaagtgtgctaaaagtttaagtgtaat---agaaaatgacagagtagac 181
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 524 aagtgaaaacaaaagtgtgctaaaagtttaagtgtaataggagaaaatgacagagtagac 465
Query: 182 gttgaatagctgattggaaggaacactaatggagtgaggcttcctggtggttgacagtag 241
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 464 gttgaatagctgattggaaggaacactaatggagtgaggcttcctggtggttggcagtag 405
Query: 242 atgtcatcctctctaaatttccaaaacaagacatgagacaagtctctcacatcaggcaag 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 atgtcatcctctctaaatttccaaaacaagacatgagacaagtctctcacatcaggcaag 345
Query: 302 ttgttaatgagtagttacaaaaaatgaactgagagtagaggatggtgatgtacgcctgta 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ttgttaatgagtagttacaaaaaatgaactgagagtagaggatggtgatgtacgcctgta 285
Query: 362 cagctgaaactcaatacttgagaggctcaggcagaaggatcaagggcaacagagtgagac 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 cagctgaaactcaatacttgagaggctcaggcagaaggatcaagggcaacagagtgagac 225
Query: 422 tctgcctctaanacaaatacagtgaagcaccacattatagaagcaaaacaggagagtgga 481
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 tctgcctctaaaacaaatacagtgaagcaccacattatagaagcaaaacaggagagtgga 165
Query: 482 atttggggaatgctgatttctcaacactagtgcc 515
||||||||||||||||||||||||||||||||||
Sbjct: 164 atttggggaatgctgatttctcaacactagtgcc 131
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 918
Length adjustment: 10
Effective length of query: 505
Effective length of database: 908
Effective search space: 458540
Effective search space used: 458540
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no340_p20.g1 MSMg01no340_p20.g1 CHROMAT_FILE:
MSMg01no340_p20.g1 PHD_FILE: MSMg01no340_p20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:07 2005
(493 letters)
>mm_chr5_9346041_9346932
Length = 892
Score = 930 bits (481), Expect = 0.0
Identities = 490/493 (99%), Gaps = 1/493 (0%)
Strand = Plus / Plus
Query: 1 acagaaaactctgtgttagcattttccagcatgtagagtttggggcttctgctggtcata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagaaaactctgtgttagcattttccagcatgtagagtttggggcttctgctggtcata 260
Query: 61 aggaattatggttctctctggtttcctgaagtgggcatgggatcacaggatagatgtcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggaattatggttctctctggtttcctgaagtgggcatgggatcacaggatagatgtcat 320
Query: 121 tttttttttacactgagtttatggaaaacaaatcagcttctaagttagaattaccttata 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttttttt-acactgagtttatggaaaacaaatcagcttctaagttagaattaccttata 379
Query: 181 ttataaatgcagaacttctattaaccttagtagagtcttacagtgattctcagttggtga 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 380 ttataaatgcagaacttctattaaccttagtagagtcttacagtgatcctcagttggtga 439
Query: 241 aggatgcagatttctctccagggaaagagttgaaaatttctgaagatgctctcaatgaca 300
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 440 aggatgcagatttctctccaggggaagagttgaaaatttctgaagatgctctcaatgaca 499
Query: 301 tgctcaggatgatgtgcctggtagtagaggtatctggtgaacagaagcaggatgctgcag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgctcaggatgatgtgcctggtagtagaggtatctggtgaacagaagcaggatgctgcag 559
Query: 361 cctccacaccaggacagggcgcctgctgaagtactgggctcaaaacccttgggtttcaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cctccacaccaggacagggcgcctgctgaagtactgggctcaaaacccttgggtttcaat 619
Query: 421 tccacttccagtgctctctgaatttcagttatttcccaagctgctgtcactctcccagtt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tccacttccagtgctctctgaatttcagttatttcccaagctgctgtcactctcccagtt 679
Query: 481 tctctttcttctc 493
|||||||||||||
Sbjct: 680 tctctttcttctc 692
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 892
Length adjustment: 10
Effective length of query: 483
Effective length of database: 882
Effective search space: 426006
Effective search space used: 426006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
