BAC Information

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BAC

Clone NameMSMg01-341D11
Chromosome5 (Build37)
Map Location 60,230,586 - 60,230,986
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041396, LOC666499, EG625870, LOC100041425
Downstream geneLOC546866, Cbfa2t2-ps1, LOC100041498, LOC666597
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341D11.T7 (MSMg01no341_d11.b1)MSMg01-341D11.TJ (MSMg01no341_d11.g1)
ACCAG455067AG455068
length764770
length of high quality
(start - end)
487 (44 - 530)401 (75 - 475)
definitionCHROMAT_FILE: MSMg01no341_d11.b1 PHD_FILE: MSMg01no341_d11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:24 2005CHROMAT_FILE: MSMg01no341_d11.g1 PHD_FILE: MSMg01no341_d11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCTATTGCAGCAAGACTTACTAAAATCAAAGGCTATTAGTTATGTCT
ATGACAATTGTGTCACTATTACAACAGTGAGTCTGTCCAGACTGGTTATA
ATTGTAGTTCTAAGGTACACATATGGATACAACTGATGAATGTTTTTTCC
TCTGGTAATATTAAAGGCCACTTCAAGCTGTAGGAAAGCTAATAGATAGG
GATAAAACTTCCAGAATTTTACCAGTGTGATTTCCCCATGTTCTATGACT
TAACTATGTAACATCTTCACCAATAAGATTCTGAGCATCAAGCTCTTGAA
ATCAAAAAGCATTGGAAATAACCTATTATTTAAGGGAAATCTGTGGAATC
TCAATAGTTAGCAACTTCAAACAAGATTAACCTTTCCTTACAATGTGCGT
TCTGTTTGTTAACTTGTATTTTAGGTAATGTTTCCCTACCATAGGATGAC
TTCAATTGAACTACTTTTCTATATGTATATATTCATGTACACGTACACAC
ACATATTCATCCATTATTTATATATATATTTGTTATCCCATAAAGTCTTC
TTTCTTTACCCCTCTATTCTTCTTTGCCTTTGTTTTTATATCGATTTCCT
CCCTCCCATTACCCATGTACCCCTGTATTGTAATTTGCTTTTTTCCCCCC
CCTTTATTCCTTCCTTATATTTTGTTTCTCTTTTTTCCCCTCCTCCTGTA
TTTTTTCTTTTTTT
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTAGAAAACCTCAGAGTGAAGCTCA
CATTCAGGGAAAAGAATGAGTATGCATTTATTCACACAACCACAAATAAC
TAAGATATGTGCTATGTGGAAGTAAGTTCATAATGATTATTTTATTAGGT
CACAGAATTAAATGATTTTCATAATAGTCCTGGTTCTTTATGTGATCCTA
ATGGCTATTGAGTTAGCTACAGGTGAGCATTTGCTGATAAATCCAAAATA
TCAATGTTCAACTTCTTTACCATCCACCTTACATAATGAGGTAAGATGAT
AACTAGACTCTAGAGTGCACATCTTCCTAAAGGCAATGTGAACTCTGTAA
TGTAGGTAACCTTGGAATCGAGTGAATATTATACTGAGGACTATGGAATT
ATAAGCACTTTATAGGATTATCATGCGTTTACNATTTAGAGTGCTTTTTT
ACCTTCTGGCAAGTTTTCTAAGTGTTCTGATCAGAAAAGGCTATTCTTTT
TGAAGGGCCAGGAAACGGTGACGGAAAAGATAATGGTCTGTGGTTTTTCC
CCGGCTACATAATACCTCTTTCTCTTTTTTGTTTTACAATAATTTCCCTT
TTTTTTTTTTATCTTTCAACGACCCCCCCCCCCATTTTTTTTTCTCTCCC
CCTACCAATTTTATCTCCTATTTCCCACTACCTTCATCCGCCCTTTTTCT
TATCCTTTTCCTTTTTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_d11.g1 MSMg01no341_d11.g1 CHROMAT_FILE:
MSMg01no341_d11.g1 PHD_FILE: MSMg01no341_d11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:24 2005
         (401 letters)



>mm_chr5_60230386_60231186
          Length = 801

 Score =  729 bits (377), Expect = 0.0
 Identities = 395/401 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttagaaaacctcagagtgaagctcacattcagggaaaagaatgagtatgcatttattca 60
           ||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 601 tttagaaaaccacagagtgaatctcacattcagggaaaagaatgggtatgcatttattca 542

                                                                       
Query: 61  cacaaccacaaataactaagatatgtgctatgtggaagtaagttcataatgattatttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 cacaaccacaaataactaagatatgtgctatgtggaagtaagttcataatgattatttta 482

                                                                       
Query: 121 ttaggtcacagaattaaatgattttcataatagtcctggttctttatgtgatcctaatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttaggtcacagaattaaatgattttcataatagtcctggttctttatgtgatcctaatgg 422

                                                                       
Query: 181 ctattgagttagctacaggtgagcatttgctgataaatccaaaatatcaatgttcaactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ctattgagttagctacaggtgagcatttgctgataaatccaaaatatcaatgttcaactt 362

                                                                       
Query: 241 ctttaccatccaccttacataatgaggtaagatgataactagactctagagtgcacatct 300
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ctttaccatccacctaatataatgaggtaagatgataactagactctagagtgcacatct 302

                                                                       
Query: 301 tcctaaaggcaatgtgaactctgtaatgtaggtaaccttggaatcgagtgaatattatac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tcctaaaggcaatgtgaactctgtaatgtaggtaaccttggaatcgagtgaatattatac 242

                                                    
Query: 361 tgaggactatggaattataagcactttataggattatcatg 401
           ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 241 tgaggactatggaattacaagcactttataggattatcatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 801
Length adjustment: 9
Effective length of query: 392
Effective length of database: 792
Effective search space:   310464
Effective search space used:   310464
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)