BAC Information

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BAC

Clone NameMSMg01-341I21
Chromosome5 (Build37)
Map Location 72,816,910 - 72,998,575
singlet/doubletdoublet
Overlap geneCorin, Nfxl1, Zar1, EG545758, Cnga1
Upstream gene4930503B16Rik, Gabra4, Gabrb1, LOC666545, Commd8, Atp10d
Downstream geneLOC384275, Npal1, Txk, Tec, Slain2, Slc10a4, LOC667127, Fryl, Ociad1, Ociad2, LOC667154, LOC100042205, C130090K23Rik, LOC627733, Dcun1d4, BC031901
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341I21.T7 (MSMg01no341_i21.b1)MSMg01-341I21.TJ (MSMg01no341_i21.g1)
ACCAG455321AG455322
length757825
length of high quality
(start - end)		433 (38 - 470)175 (73 - 247)
definitionCHROMAT_FILE: MSMg01no341_i21.b1 PHD_FILE: MSMg01no341_i21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:51 2005CHROMAT_FILE: MSMg01no341_i21.g1 PHD_FILE: MSMg01no341_i21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,998,146 - 72,998,575)(72,816,910 - 72,817,082)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAA
GAACTCTGGCGCTCTGCAGCAAGGGCTGAAGCCAAGACCGAATATTAGAA
CAAAGATACAGCTAGCACTTTGCTTTCTTGGGAAATCATAAAAATTGTTA
ACAATGGTATGCCAGAAATTGAGAACTGGAACCAAGTGTGTAACTTATCA
TATAATAATACTGCAGAATGTAAATGCAACTCATCAAAGAAAGGATTTTA
CCTGGGTGTGTAGTGTGTAAAATCATATAACAATCACTTTATATATCCAT
CTATTTAGCTCTCTGTATATTGCTTTTATGTCAGGAGCCATCTAGGATAG
GCTCGGGCTACCTGGTGGCCTTCTTGGAGGTGGCCCACCACTTTTGCACG
GTCTGGGATGGGTGAGCTCAATGGCAAGGTCCCAAAGAGACTTCATCTCA
CGATCGTTTCCTGCAGCTGATATGCCTTTCCTGGCATTATTAAGTTAAAA
TAAGAATCCCTGGGCATTGCCTCACCTTATTGAGCATATTTCCGGCCCAC
CATTTTTAAATAAACTTTTCTGAATTATTGCCGTCCAAAAGAAATGAAAA
TCTCCACTAATTTTTGCCCCGATTCTTCAATCTTTCCAAACCTTCACAAA
TATTTTCCAATGTATCCCCCAACAACTGATAATTTTTATATTTTAATTTC
AGTCTCTTTTCACCCCTTANCATCATAAACTCTATTTCCCCTTCTCTATC
CCCCCCT

GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAATGGTGAGACAGGCTACACTATTTTGG
AATATAAGGATCTATATCCAAGCAACAACACACTGGCAACTGAAAAACAG
GACTTGGCAGAGGGGAAGGACCACTTTGATTATCAGAATGACTATTTTAG
GATGGGTGGTTGTTCTTAGTTGATATGTGAAGTACATTTGGTGAGGTGCA
AAAAAAGTCCCTAATGCATTTCAACTCAAGTGAAGGCAGAGATTTCTGAT
GTACCTCTCCAAGTACTTGTTGTTTCTTTTGATTAATTTGCATACATGTA
ACCACATTATGATAACAACGACTCGCATCCACTTCTACTAGTAATGATGT
TTCCACATTTTCCCCCCTACCTCCTATCGCTGTTCGTTTTCCTCTTCACC
CCTCCCTTCCTGATTTCCATCCTCTGTGCCCTTTTTTTCCCCTTCCCTCC
TACCTTCCCTATCCTTTCCTCTCTCACACCCTTCTTTTTTTCCCTCTCCC
CCCCTCCCATTCCCTTTTTAATTTTGCTCGCCCCATTCGATTTACCTTTC
TTTTTTCCTTCTCCCTTTCCCCCCCCCCTCTTTCCCCTTATCCTTTTTTT
TCCCATCTACCCTTTTCCTTTCTTTCCCCCCTCTTTTCCTTATTCTGTTC
CCCCTCTTACCCCCTTTGTTCCCTATTTCCTTCTTTATCTCCCCCCCTCT
TTCCCCCCCCTTTTACCCCTTCTTCGTTCTCCCTTACCCTCCCAATTCCC
CAATTCCTCCACCTACTTTTAGTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_i21.b1 MSMg01no341_i21.b1 CHROMAT_FILE:
MSMg01no341_i21.b1 PHD_FILE: MSMg01no341_i21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:51 2005
         (433 letters)



>mm_chr5_72998085_72998917
          Length = 833

 Score =  762 bits (394), Expect = 0.0
 Identities = 421/430 (97%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaaagaactctggcgctctgcagcaagggctgaagccaagaccgaatattagaa 63
           ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ggaattcaaagcactctggagctctgcagcaagggctgaagccaagaccgaatattagaa 432

                                                                       
Query: 64  caaagatacagctagcactttgctttcttgggaaatcataaaaattgttaacaatggtat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 caaagatacagctagcactttgctttcttgggaaatcataaaaattgttaacaatggtat 372

                                                                       
Query: 124 gccagaaattgagaactggaaccaagtgtgtaacttatcatataataatactgcagaatg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gccagaaattgagaactggaaccaagtgtgtaacttatcatataataatactgcagaatg 312

                                                                       
Query: 184 taaatgcaactcatcaaagaaaggattttacctgggtgtgtagtgtgtaaaatcatataa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 taaatgcaactcatcaaagaaaggattttacctgggtgtgtagtgtgtaaaatcatataa 252

                                                                       
Query: 244 caatcactttatatatccatctatttagctctctgtatattgcttttatgtcaggagcca 303
           ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 251 caatcactttatatatccatctatttacctctctgtatattacttttatgtcaggagcca 192

                                                                       
Query: 304 tctaggataggctcgggctacctggtggccttcttggaggtggcccaccacttttgcacg 363
           ||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||| |
Sbjct: 191 tctaggataggctcgggctacctggtggccttcttggagctggcccatcatttttgcatg 132

                                                                       
Query: 364 gtctgggatgggtgagctcaatggcaaggtcccaaagagacttcatctcacgatcgtttc 423
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 131 gtctgggatgggtgagctcaatggcaaggtcccaaagagacttcatctcaggatcgtttc 72

                     
Query: 424 ctgcagctga 433
           ||||||||||
Sbjct: 71  ctgcagctga 62


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space:   349376
Effective search space used:   349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no341_i21.g1 MSMg01no341_i21.g1 CHROMAT_FILE:
MSMg01no341_i21.g1 PHD_FILE: MSMg01no341_i21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:51 2005
         (175 letters)



>mm_chr5_72816708_72817282
          Length = 575

 Score =  319 bits (165), Expect = 5e-92
 Identities = 171/173 (98%)
 Strand = Plus / Plus

                                                                       
Query: 3   tggtgagacaggctacactattttggaatataaggatctatatccaagcaacaacacact 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 tggtgagacaggctacactattttggaatataaggatctatatccaagcaacaacacact 262

                                                                       
Query: 63  ggcaactgaaaaacaggacttggcagaggggaaggaccactttgattatcagaatgacta 122
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 263 ggcaactgaaaaacaggacttggcagaagggaaggaccactttgattatcagaatgacta 322

                                                                
Query: 123 ttttaggatgggtggttgttcttagttgatatgtgaagtacatttggtgaggt 175
           ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 323 ttttaggatgggtggttgttcctagttgatatgtgaagtacatttggtgaggt 375


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 175
Length of database: 575
Length adjustment: 8
Effective length of query: 167
Effective length of database: 567
Effective search space:    94689
Effective search space used:    94689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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