BAC Information

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BAC

Clone NameMSMg01-341N09
Chromosome5 (Build37)
Map Location 15,689,982 - 15,690,456
singlet/doubletsinglet
Overlap geneCacna2d1
Upstream genePclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781
Downstream geneLOC668121, Hgf, EG668131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341N09.T7 (MSMg01no341_n09.b1)MSMg01-341N09.TJ (MSMg01no341_n09.g1)
ACCAG455533AG455534
length740856
length of high quality
(start - end)
493 (43 - 535)167 (74 - 240)
definitionCHROMAT_FILE: MSMg01no341_n09.b1 PHD_FILE: MSMg01no341_n09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:11 2005CHROMAT_FILE: MSMg01no341_n09.g1 PHD_FILE: MSMg01no341_n09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATACTCTTACTGAATATGCTACAGAGTTAGAGCCTATCAAATCAAATA
GGTCAGTGACTAAGTAAATACATTATAATGTACTATGAAAATTGGTAAAA
TTTCAGTTCCTACACTACTTAGGAAACAGCATTAACATAAGCAAGCACAC
TCTCAATCAAACCACACAATAGGCTTTTGACACATATAAAATCAAAATAT
TGTGATAAATTAAATTTGTGCAATGTTAGCCTTGAATCTTGCCATTGCTA
AAGAATTTCAAAGCTGTTGGAAGCTGGGAGTCCTTGGCATGCTCAGCCTC
CACTCTAGGTTAACAGACAATAGCTGCGCATTGTTCTCTGTACACAAAGC
TTTCCCAGTGCTCCAGAATGCTCCTGTACCTAGACCTTGGCTTTTATCTT
AGCAGCTTGTTCTCTGAGTCACAAAGCATGACTCAAGACAATTCATACTC
ATCAATGAAATATCCCTGACATTCTGAGTGCTAAGAATAGAAGCATCAAC
TAGAATGTTACTAAGCCCCATGCCAGAGAATCTGTCGACGCACATTTCCC
AATTTTTCCTTTTGTGCCTACTTATACGAAAATATTACCGTGGCGGAGAT
GATACCATATCGACTTTGTATTTTTGCTTGTTCCCCCCCTTTTTACTTCT
TCTTCTTTTTCCCTTTCTCCGCCCCACTTATTTAAATTAT
TTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTAAATAAAAAGACATGTGAACTCCTA
GCTCGTCGAAGCAGAGAGAGGTGGGTCTTTGTGAGCTTGAGGTTGGCCTG
GTCTATGTAGTGAGTTCCAGGACAGCCAGGGCTAAATAGTGAGACCAGTC
TAGTGGGAGTGAGAAGGGAAGTAGAGGGAAAGAGGAATGGCTGCCTTCTT
TTTTCTTTTCCGTCTTTCCCTTTTTCTTCCCTTCCTTTCTTTCCCCCTCC
TCCCTTTTTTTTTCCTTCTTCCCTTTCTCCCTTTTTTTCCTTCCCCTTCC
TCTTCCCTTTTTTTTTTCCCTTTCCTTTTTTTTCCTTCCGTTTCTCCTTT
CCTCTCTCTCTTCTTCCCTCTTTTTTTTCCTCCCCCCTATTCTATTTCTC
TTTTCGTCTTTCCCTTCCCCCCCCTTTTTCCCTTTTTCCTTTTCCCCTTT
TTTTTATCCCCCTCCTTTTCCCTTTTCACCTCTCTTTCCTTCCCCTTCCC
CCTTCTTTCCCCTCCCCTTTTCTTTTCCTTCCCCCCCCTTCTCTCTCTCC
CTTTCCTTTTTCCCTTTCCCCTTCCTTTTCCTCCCCCTTCTTTTTCTTTC
TTATCTTTTCCCCCCTTTTTTTTTTCCCCCCCCTTCCCCTTTCTTTTTTT
TTTCTTTTTCTTTTCGCCCTTTTTATTATTTTTTCTTTCCTTCTTCCCCC
CTCCCCTTTTCTATTTTCTATTTCCCCCTCCCTCTTTTTATCTCTCATTT
TACCCTCTTCCCTTCTTTCCCCTCTCTTTTCTTTTTCCCATTTCGCTCTA
TTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_n09.b1 MSMg01no341_n09.b1 CHROMAT_FILE:
MSMg01no341_n09.b1 PHD_FILE: MSMg01no341_n09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:11 2005
         (493 letters)



>mm_chr5_15689764_15690656
          Length = 893

 Score =  864 bits (447), Expect = 0.0
 Identities = 468/475 (98%)
 Strand = Plus / Minus

                                                                       
Query: 19  actgaatatgctacagagttagagcctatcaaatcaaataggtcagtgactaagtaaata 78
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 693 actgaatatgctacagagttagagactatcaaatcaaataggtcagtgactaagtaaata 634

                                                                       
Query: 79  cattataatgtactatgaaaattggtaaaatttcagttcctacactacttaggaaacagc 138
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 633 cattataatgtactatgaaaattggtaaaatttcagttcctacactacttagggcacagc 574

                                                                       
Query: 139 attaacataagcaagcacactctcaatcaaaccacacaataggcttttgacacatataaa 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 attaacataagcaagcacactctcaatcaaaccacacaataggcttttgacacatataaa 514

                                                                       
Query: 199 atcaaaatattgtgataaattaaatttgtgcaatgttagccttgaatcttgccattgcta 258
           ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 513 atcaaaatattgtgataaattaaatttgtgcaatgttagccttgaattttgctattgcta 454

                                                                       
Query: 259 aagaatttcaaagctgttggaagctgggagtccttggcatgctcagcctccactctaggt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 aagaatttcaaagctgttggaagctgggagtccttggcatgctcagcctccactctaggt 394

                                                                       
Query: 319 taacagacaatagctgcgcattgttctctgtacacaaagctttcccagtgctccagaatg 378
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 393 taacagacaatagctgcgcattgttctctgtacacaaagctttcccagggctccagaatg 334

                                                                       
Query: 379 ctcctgtacctagaccttggcttttatcttagcagcttgttctctgagtcacaaagcatg 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ctcctgtacctagaccttggcttttatcttagcagcttgttctctgagtcacaaagcatg 274

                                                                  
Query: 439 actcaagacaattcatactcatcaatgaaatatccctgacattctgagtgctaag 493
           ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 273 actcaagacaattcatactcatcaatgaaatatccttgacattctgagtgctaag 219


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)