BAC Information

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BAC

Clone NameMSMg01-341P19
Chromosome5 (Build37)
Map Location 18,687,710 - 18,688,093
singlet/doubletsinglet
Overlap genenone
Upstream geneGnai1, LOC100041818, LOC668167
Downstream gene4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341P19.T7 (MSMg01no341_p19.b1)MSMg01-341P19.TJ (MSMg01no341_p19.g1)
ACCAG455648AG455649
length801818
length of high quality
(start - end)		410 (39 - 448)384 (71 - 454)
definitionCHROMAT_FILE: MSMg01no341_p19.b1 PHD_FILE: MSMg01no341_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:22 2005CHROMAT_FILE: MSMg01no341_p19.g1 PHD_FILE: MSMg01no341_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCT
TGATGCTCTTGGACTTTGTACAAGGATATAAGAATGGATCAATTCACATT
CTTCTACATGATAACCTCCAGGTGTGCCAGCACCATTTGTTGAAAATAAT
GTCGTTTTTCCACTGGATTGTTTTAGGTCCTTTGTAAAAGATCAAGTGAC
CATGGTATGTGGATTCATTTCTGGGTCTTCAATTCTATTCCATTGATCTA
CCTGTCTGTTGCTGTACCAGTACCATGCAGTTTTTAATCACAATTGCTCT
GTAGTACAGCTTTAGATCAGGCATGGTGATTCCACCAGAGGTTCTTTTAT
TGTTGAGAATAATTTTTGCTACCCTAGGTTTTTTGTTATTCCAGGTGAAT
TTGCAAATTGCCCTTTCTAAATCTGTGAAGAATTGAGTTGGAATTTTGTT
GGGGATTGCATTAAATCTGTATATTCCTTTCATTCAGGGAGCTATTTTTA
CTATATTGACCCTGCCAATCCATGAACATGGGAGATCCTTCCTCCTTCTT
AAAACCTCACCTTTTTCCTTTCCAGACTTGTTCGTTTTCCACCTACTTAC
ACTTTTTTTTTTTTTATCCCCCTTTAATTCCCCTTTTTTTTTCACCTTTT
TTTCCCTATTTCTCTCCTCCTTGCTTGTTCCTCTACACTCATTTCTTTTC
CCTTATTCCCCTTTTTCCTTTTTTTCACTTTTTCCCCCCCCTTTTTTCCT
TCTTATTTATTTTTTACCCATTAGCCTCCTCCCCCTTTATTTCCCTTTTT
G

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTCAGGACTCTGAGGGCAATGATGTGCATG
TGCCTTTGTCCCTGCTTCCACTGACCACGATGGAAGGATCAGTTTAATCA
CTTTGCAGATATCAGTGTCTTTATTAGGAAGCTTTTAGGATACTTAACCA
TGACTCCATATTCAGAACCATTTCACAATCAGTCCATTTAAAGTCAAGTT
CCATACAAATGCCGCAAACTTTTCTTTGGGTCTTAGGATTGGGCAGTAAG
AAGATTTCCTGCTGCGTTGATATGTCTTGCTCTCACCTCTGAGACTGACT
GGGCAGTCTGTCTTTTCCTGTAGCTTGCCTATAGAATCTCCTTAAGTGGT
CAAGGCATGATGACCCTTATGTTGGCTTCTTGTTCTAATTTGCTACTTTG
TAGCACATTTATGTCTAGCACACATCTTGTACATTTTAGGGACTCCCGAA
TTTTCCCTTTTTATATTCACGTTTCCTTAGGCACGTGTACCCTGCCGTTC
GTTCCTTCCTCACCCTACTTCCTGCTTTGCATTTCTCGTTCTCTTCCTTT
TCTCCCCTTTTTTCTGGTTTCTTCTTTATTCCCCATTTTTCCTTCTCCCC
CCTTCCCCCTCCTTTTCTTTTCTTTCTCTTTCCCCCTTTCTTTTATTTTC
TTTCCTTCTCCCCCCCTCTCCTTTATTTTTCTTCTCTCCCCCCTACCTTT
TTTTTTCTATCGTCATTCCGTCTTCGCTTCCATCCCCCCTCTTTCTCTTT
CCTGTTTCTCTTTCGCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_p19.g1 MSMg01no341_p19.g1 CHROMAT_FILE:
MSMg01no341_p19.g1 PHD_FILE: MSMg01no341_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:23 2005
         (384 letters)



>mm_chr5_18687510_18688293
          Length = 784

 Score =  681 bits (352), Expect = 0.0
 Identities = 376/384 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcaggactctgagggcaatgatgtgcatgtgcctttgtccctgcttccactgaccacga 60
           |||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||| |
Sbjct: 584 ctcaggactctgagggcaatgatgtggatgtgcctttgtccctgcctccactaaccacaa 525

                                                                       
Query: 61  tggaaggatcagtttaatcactttgcagatatcagtgtctttattaggaagcttttagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 tggaaggatcagtttaatcactttgcagatatcagtgtctttattaggaagcttttagga 465

                                                                       
Query: 121 tacttaaccatgactccatattcagaaccatttcacaatcagtccatttaaagtcaagtt 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tatttaaccatgactccatattcagaaccatttcacaatcagtccatttaaagtcaagtt 405

                                                                       
Query: 181 ccatacaaatgccgcaaacttttctttgggtcttaggattgggcagtaagaagatttcct 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ccatacaaatgcagcaaacttttctttgggtcttaggattgggcagtaagaagatttcct 345

                                                                       
Query: 241 gctgcgttgatatgtcttgctctcacctctgagactgactgggcagtctgtcttttcctg 300
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 344 gctgcgttgatatgtcttgctctcacctctgagactgactgggaagtctgtcttttcctg 285

                                                                       
Query: 301 tagcttgcctatagaatctccttaagtggtcaaggcatgatgacccttatgttggcttct 360
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 284 tagcttgcctatagaatctccttaagtggtcagggcatgatgacccttatgttggcttct 225

                                   
Query: 361 tgttctaatttgctactttgtagc 384
           ||||||||||||||||||||||||
Sbjct: 224 tgttctaatttgctactttgtagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 784
Length adjustment: 9
Effective length of query: 375
Effective length of database: 775
Effective search space:   290625
Effective search space used:   290625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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