Query= MSMg01no342_c15.b1 MSMg01no342_c15.b1 CHROMAT_FILE:
MSMg01no342_c15.b1 PHD_FILE: MSMg01no342_c15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:36 2005
(417 letters)
>mm_chr5_55303481_55304297
Length = 817
Score = 727 bits (376), Expect = 0.0
Identities = 400/408 (98%), Gaps = 1/408 (0%)
Strand = Plus / Minus
Query: 11 atata-aatgtcactttatttgaagtatgtttgaagaattgatgaattaactgaaacagt 69
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 817 atatacaatgtcactttatttgcagtatgtttgaagaattgatgaattaactgaaacagt 758
Query: 70 tggcattccttagaatgtttgctttcttggttcatcaactttgggttacacagagtcggt 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 tggcattccttagaatgtttgctttcttggttcatcaactttgggttacacagagtcggt 698
Query: 130 gttttagccacctctcatgatgctgtaaacaaataccaaaaacgattcatattaagggag 189
|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 697 gtattagccacctctcatgatgctgtaaacaaataccaaaaacgattcaaattaagggag 638
Query: 190 aagtgatttattttaactcaggtttttagtagaaaaaggaactgtggtaagataaatttc 249
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 637 aagtgatttattttaactcaggtttttagtagaaaaaggaactgtggtaagatcaatttc 578
Query: 250 tttctatggcaatgggaattttgggcacctgcttactcagaacttgtcagataagagagt 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 agtctatggcaatgggaattttgggcacctgcttactcagaacttgtcagataagagagt 518
Query: 310 tgtggagacagacgggaactgtgagtgtcagtctccccacaccctcaccctgccctgcca 369
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 tgtggagacagaccggaactgtgagtgtcagtctccccacaccctcaccctgccctgcca 458
Query: 370 tctctatctctaccaagtaagccatatgtacagaatgttccaaacatc 417
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tctctatctctaccaagtaagccatatgtacagaatgttccaaacatc 410
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space: 329664
Effective search space used: 329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no342_c15.g1 MSMg01no342_c15.g1 CHROMAT_FILE:
MSMg01no342_c15.g1 PHD_FILE: MSMg01no342_c15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:36 2005
(483 letters)
>mm_chr5_55124701_55125584
Length = 884
Score = 859 bits (444), Expect = 0.0
Identities = 468/476 (98%), Gaps = 1/476 (0%)
Strand = Plus / Plus
Query: 9 catacatttcatggacactggattatcaagtgttcttagttctctgttgtctgaattatc 68
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 209 catacatttcatggacactggattatcaagtgttcttagttctctgttatctgaattatc 268
Query: 69 catggaaaa-tgtaagatttataaaacaagcagaaacaatggaatataagtaatgggaaa 127
||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 269 catggaaaaatgtaagatttataaaacaagcagaaacaatggaatataagcaataggaaa 328
Query: 128 attgtctggggagatttgtagacttataggatagtttactttcctaagatatgacaaaga 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 attgtctggggagatttgtagacttataggatagtttactttcctaagatatgacaaaga 388
Query: 188 atgggtttgtctgtaaactaatcagagtcattggaatataggtttgtactgagtacaaaa 247
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 389 atgggtttgtctgtaaactaatcagagtcattggaatataggtttctactgagtacaaaa 448
Query: 248 acattaactcatttttattgtaccaggcttactagaagctaacacaaactattggggaaa 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 acattaactcatttttattgtaccaggcttactagaagctaacacaaactattggggaaa 508
Query: 308 agttgaggcttttgtgtgaatgtgggttataacatgtctcagcaacaggccaaaatgtga 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 agttgaggcttttgtgtgaatgtgggttataacatgtctcagcaacaggccaaaatgtga 568
Query: 368 ctccttttgccaagtgacttgagtggaagctcttactaggaaaatgatggtccagaaaac 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 ctccttttgccaagtgacttgagtggaagctcttactaggaaaatgatggtccagaaaac 628
Query: 428 cctacttattcccatgttgacttttctgtatctataactaatctttctattttgtt 483
||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 629 tctacttattcccatgttgactcttctgtatctataattaatctttctattttgtt 684
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 884
Length adjustment: 10
Effective length of query: 473
Effective length of database: 874
Effective search space: 413402
Effective search space used: 413402
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
