Query= MSMg01no342_k20.b1 MSMg01no342_k20.b1 CHROMAT_FILE:
MSMg01no342_k20.b1 PHD_FILE: MSMg01no342_k20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:16 2005
(264 letters)
>mm_chr5_73538155_73538819
Length = 665
Score = 466 bits (241), Expect = e-136
Identities = 259/265 (97%), Gaps = 1/265 (0%)
Strand = Plus / Plus
Query: 1 attcccagccttcc-tcaaacaactccccacgggcagattgccagtaagtctagtttaat 59
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcccagccacccatcaaacaactccccacgggcagattgccagtaagtctagtttaat 260
Query: 60 atgcctagatggaagaaaatgatccaattctcctaaccgcctggggggggagggggcgct 119
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct: 261 acgcctagatggaagaaaatgatccaattctcctaactgcctggggggggagggggggct 320
Query: 120 tctgagtgtgttacctgcctattccctaaaacaccaaacaccggcaaccgttagctctaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgagtgtgttacctgcctattccctaaaacaccaaacaccggcaaccgttagctctaa 380
Query: 180 ctccagaactgctcctattaaacacatgtcaaatgctataggtgcttctacggctttttc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctccagaactgctcctattaaacacatgtcaaatgctataggtgcttctacggctttttc 440
Query: 240 ttctacttctcaggtcctggttcac 264
|||||||||||||||||||||||||
Sbjct: 441 ttctacttctcaggtcctggttcac 465
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 665
Length adjustment: 9
Effective length of query: 255
Effective length of database: 656
Effective search space: 167280
Effective search space used: 167280
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no342_k20.g1 MSMg01no342_k20.g1 CHROMAT_FILE:
MSMg01no342_k20.g1 PHD_FILE: MSMg01no342_k20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:16 2005
(494 letters)
>mm_chr5_73662163_73663056
Length = 894
Score = 876 bits (453), Expect = 0.0
Identities = 468/473 (98%)
Strand = Plus / Minus
Query: 22 aaaaacaaaaaccctctgcctgccaatcatttcctttttcatggacattcttgtcttctt 81
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 706 aaaaacaaaaaccctctgcctgccaatcatttccttttccatggacattcttgtcttctt 647
Query: 82 atatcagcatcatcagcatatttaacttttctcagacacttagggtggtgggcggttccg 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 atatcagcatcatcagcatatttaacttttctcagacacttagggtggtgggcggttccg 587
Query: 142 tctctgtggtttctggatttttctgtcgtggctttacatacaatgaattgtagatgattt 201
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 586 tctctgtggtttctggatttttctgtcgtggctttacatacaatgagtcgtagatgattt 527
Query: 202 ttcgacccctctcctcctcacaacccttgaagacacctcagcatagtccgatgcactaac 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 ttcgacccctctcctcctcacaacccttgaagacacctcagcatagtccgatgcactaac 467
Query: 262 gtgctgatgttatagttgtcacgtgatagtgtgagcagaagagctctgtgacctaccctt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 gtgctgatgttatagttgtcacgtgatagtgtgagcagaagagctctgtgacctaccctt 407
Query: 322 accttctttgactgcattgtcaggcttcatagggccattcccagggttgcagccagacct 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 accttctttgactgcattgtcaggcttcatagggccattcccagggttgcagccagacct 347
Query: 382 ctttatctccccagtgccaccattgttaaatattactctcctgctttcttgtattttcca 441
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 cttcatctccccagtgccaccattgttaaatattactctcctgctttcttgtattttcca 287
Query: 442 ttaaccttcttggaccccactctgctgagacttcctgaggcaggcaagggcat 494
|||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 286 ttaaccttcttggaccccactctgctgacacttcctgaggcaggcaagggcat 234
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space: 427856
Effective search space used: 427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
