Query= MSMg01no342_l09.b1 MSMg01no342_l09.b1 CHROMAT_FILE:
MSMg01no342_l09.b1 PHD_FILE: MSMg01no342_l09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:18 2005
(246 letters)
>mm_chr5_124652220_124652865
Length = 646
Score = 466 bits (241), Expect = e-136
Identities = 241/241 (100%)
Strand = Plus / Minus
Query: 5 gaattcttccaattatcagcttccccaatttcttcctttatggccagagttgaaggcaga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gaattcttccaattatcagcttccccaatttcttcctttatggccagagttgaaggcaga 344
Query: 65 tgtttggataatgtccccagagtccttagctggctttcctgggccagagaagatgatcga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tgtttggataatgtccccagagtccttagctggctttcctgggccagagaagatgatcga 284
Query: 125 gacctcagtgtcattcagtgtgagacttcacccagatcatttcacagacccctgttccag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 gacctcagtgtcattcagtgtgagacttcacccagatcatttcacagacccctgttccag 224
Query: 185 ccctaggtgggtgcttctggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 ccctaggtgggtgcttctggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatg 164
Query: 245 t 245
|
Sbjct: 163 t 163
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space: 150969
Effective search space used: 150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no342_l09.g1 MSMg01no342_l09.g1 CHROMAT_FILE:
MSMg01no342_l09.g1 PHD_FILE: MSMg01no342_l09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:18 2005
(456 letters)
>mm_chr5_124516131_124516986
Length = 856
Score = 762 bits (394), Expect = 0.0
Identities = 447/476 (93%), Gaps = 21/476 (4%)
Strand = Plus / Plus
Query: 1 tctaattaaaggaaaatatcatggcctatattaagaaaagctagcgtatgcctgtaatcc 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 182 tctaattaaaggaaaatatcatggcctatattaagaaaagctagcatatgcctgtaatcc 241
Query: 61 cagcacttgggaggcagaagcaggaggatttctgagtttgaggccagccaggtctacaga 120
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 242 cagcacttgggaggcagaagcaggaggatttctgagtttgaggccagcctggtctacaaa 301
Query: 121 gtgagttccaggacagccatcgctacacagagaaaccctgtcttgaaaaaccaaaaaaaa 180
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gtgagttccaggacagccagggctacacagagaaaccctgtcttgaaaaaccaaaaaaaa 361
Query: 181 aaaaaaaaaaaaaaaaaaaaa------------------aaa-aaagagggaaaagctag 221
||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 362 aaaaaaaaaaaaaaaaaaaaaagaaagaaagaaagaaagaaagaaagagggaaaagctag 421
Query: 222 agagacagggagaacacattttattaaagttcccactctgaaggcaggcgctctcccttt 281
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 422 agagacagggagaacacattgtattaaagttcccactctgaaggcaggcgctctcccttt 481
Query: 282 ggtaagatgctagg-gcatctttccttcaccctatgcttacacctatgttaaaatctttc 340
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ggtaagatgct-ggagcatctttccttcaccctatgcttacacctatgttaaaatcttta 540
Query: 341 ctatcccagctcttcctaaggttccattcagaacagacctgcttggcctgagccaaggtc 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ctatcccagctcttcctaaggttccattcagaacagacctgcttggcctgagccaaggtc 600
Query: 401 cctaaagctcagaaaaccgcacataagctacaccggggcgggtgagtgtccctgtc 456
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 cctaaagctcaggaaaccgcacataagctacaccggggcgggtgagtgtccctgtc 656
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space: 377316
Effective search space used: 377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
