Query= MSMg01no343_i09.b1 MSMg01no343_i09.b1 CHROMAT_FILE:
MSMg01no343_i09.b1 PHD_FILE: MSMg01no343_i09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:23 2005
(421 letters)
>mm_chr5_82187878_82188698
Length = 821
Score = 783 bits (405), Expect = 0.0
Identities = 415/421 (98%), Gaps = 6/421 (1%)
Strand = Plus / Plus
Query: 4 ggaattcagttgtg---ttccaagtattaacatttaaggtgttttctaattcatataagc 60
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagttgtgaaat---aagtattaacatttaaggtgttttctaattcatataagc 260
Query: 61 aaatgtgccaaatgcaagaacaaacctccctcattcaacaaggttgatggtttatacagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatgtgccaaatgcaagaacaaacctccctcattcaacaaggttgatggtttatacagc 320
Query: 121 aaacctgattcatttagtggacatctgaatttgaaatacaatgcctgaattgtgtgaaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaacctgattcatttagtggacatctgaatttgaaatacaatgcctgaattgtgtgaaag 380
Query: 181 aaaaatatctatatttataaaccattttaatatgcctctgggaccatgccttaaaatctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaaatatctatatttataaaccattttaatatgcctctgggaccatgccttaaaatctt 440
Query: 241 ttaaaaaaataattaaattcagcttatggtgacttatgtatttttccctctttgttttgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaaaaaaataattaaattcagcttatggtgacttatgtatttttccctctttgttttgc 500
Query: 301 tgagaatcaatcccccaaatatttcctccttggacaacaaagatgaaagataatagagta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgagaatcaatcccccaaatatttcctccttggacaacaaagatgaaagataatagagta 560
Query: 361 ctgagaagaaatgtaaacttgctgtgttcaaggaagggatcctgggaaagtaaggggcgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgagaagaaatgtaaacttgctgtgttcaaggaagggatcctgggaaagtaaggggcgg 620
Query: 421 g 421
|
Sbjct: 621 g 621
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space: 334544
Effective search space used: 334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no343_i09.g1 MSMg01no343_i09.g1 CHROMAT_FILE:
MSMg01no343_i09.g1 PHD_FILE: MSMg01no343_i09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:23 2005
(363 letters)
>mm_chr5_82374307_82375069
Length = 763
Score = 534 bits (276), Expect = e-156
Identities = 292/304 (96%), Gaps = 11/304 (3%)
Strand = Plus / Minus
Query: 1 atctaagtagcagattaatcataaacatgtaggaaggttattagtaatcacattaggatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 atctaagtagcagattaatcataaacatgtaggaaggttattagtaatcacattaggatc 245
Query: 61 caagaggtatgcatgagtacatgtacctattaactcagaatcttacttggaaaggcagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 caagaggtatgcatgagtacatgtacctattaactcagaatcttacttggaaaggcagag 185
Query: 121 gcaggaggatagctag-----------cttggactacaaaatgaaaccctgcttcaaagg 169
|||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 184 gcaggaggatagctagcagtgcatcatcttggactacaaaatgaaaccctgcttcaaagg 125
Query: 170 atgaaagagaaaaatttagaaagacaggctggttacaagactcagtacttatgagcactg 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 atgaaagagaaaaatttagaaagacaggctggttacaagactcagtacttatgagcactg 65
Query: 230 atcgcatttccataggacctgagcttgatcatcagcagctacatggtagctcacaacggt 289
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 64 atcgcatttccataggacctgagcttgatcgtcagcagctacatggtagctcacaacggt 5
Query: 290 ctat 293
||||
Sbjct: 4 ctat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 763
Length adjustment: 9
Effective length of query: 354
Effective length of database: 754
Effective search space: 266916
Effective search space used: 266916
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
