Query= MSMg01no344_b19.b1 MSMg01no344_b19.b1 CHROMAT_FILE:
MSMg01no344_b19.b1 PHD_FILE: MSMg01no344_b19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:12 2005
(425 letters)
>mm_chr5_61612538_61613363
Length = 826
Score = 360 bits (186), Expect = e-103
Identities = 198/202 (98%), Gaps = 1/202 (0%)
Strand = Plus / Minus
Query: 5 gaattc-aaatgattttgagaatacttgctaaaattttttgtttgtatactatataatgc 63
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 404 gaattcaaaatgattttgagaatacttgctaaaattttttgtttgtatactatttaatgc 345
Query: 64 atggggagacctatttgctattctagcaaatttgacttggcttcccagttatcatgtgta 123
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 344 atggggagacctatttgctgttctagcaaatttgacttggcttcacagttatcatgtgta 285
Query: 124 gtaagaaaaactgccacttgtaaacttggagctaatcctatgtgtgttgaactcagctgt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 gtaagaaaaactgccacttgtaaacttggagctaatcctatgtgtgttgaactcagctgt 225
Query: 184 tgatctgagaaactatttaaga 205
||||||||||||||||||||||
Sbjct: 224 tgatctgagaaactatttaaga 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 826
Length adjustment: 9
Effective length of query: 416
Effective length of database: 817
Effective search space: 339872
Effective search space used: 339872
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no344_b19.g1 MSMg01no344_b19.g1 CHROMAT_FILE:
MSMg01no344_b19.g1 PHD_FILE: MSMg01no344_b19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:12 2005
(473 letters)
>mm_chr5_61771793_61772665
Length = 873
Score = 907 bits (469), Expect = 0.0
Identities = 472/473 (99%)
Strand = Plus / Minus
Query: 1 cacgcgttaaaatatttgaatttgaatgacagatggaaacagaagaggcatggaagctat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 cacgcgttaaaatatttgaatttgaatgacagatggaaacagaagaggcatggaagctat 614
Query: 61 ggttgtttttaatatatatgaaagaaagaaaagagaatagttacacatacactatagcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ggttgtttttaatatatatgaaagaaagaaaagagaatagttacacatacactatagcat 554
Query: 121 aggttcaattatagacaaattcactatctaaactttttgtctttataatcttatctggat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 aggttcaattatagacaaattcactatctaaactttttgtctttataatcttatctggat 494
Query: 181 gcaaatattacttttaatttagttttagttacctttcaattttccaagatctttagtata 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gcgaatattacttttaatttagttttagttacctttcaattttccaagatctttagtata 434
Query: 241 gaatttctttgcaaagtagaacagtcccttatatttctggttataagcttagtctttaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gaatttctttgcaaagtagaacagtcccttatatttctggttataagcttagtctttaat 374
Query: 301 ggctgagcaatctccagagacttcatccagcaactgaagggagcctatgtaaagtaccac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggctgagcaatctccagagacttcatccagcaactgaagggagcctatgtaaagtaccac 314
Query: 361 agtaagacatttcatttctagaaatcctgcataggagcaggaggaaatatctgaggaaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 agtaagacatttcatttctagaaatcctgcataggagcaggaggaaatatctgaggaaat 254
Query: 421 agatggttcagggacataccactagaacaggaaaacaaggtcaaagaattaat 473
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 agatggttcagggacataccactagaacaggaaaacaaggtcaaagaattaat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space: 399569
Effective search space used: 399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
