Query= MSMg01no344_g03.b1 MSMg01no344_g03.b1 CHROMAT_FILE:
MSMg01no344_g03.b1 PHD_FILE: MSMg01no344_g03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:33 2005
(247 letters)
>mm_chr5_115276299_115276945
Length = 647
Score = 462 bits (239), Expect = e-135
Identities = 245/247 (99%)
Strand = Plus / Minus
Query: 1 ctagcctcgaactcggaaatccacctgcccctgcctcccaagtgctggccttaaaggcgt 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 521 ctagcctcgaactcggaaatccacctgcccctgcctcccaagtgctgggcttaaaagcgt 462
Query: 61 gcgctaccactgccatgctcaaggtacattttcattttgatttcactttggttctaaccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 gcgctaccactgccatgctcaaggtacattttcattttgatttcactttggttctaaccc 402
Query: 121 agcccagggaaacaaagagaccagacgactggtggtgtttgccttgaagggaacacggct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 agcccagggaaacaaagagaccagacgactggtggtgtttgccttgaagggaacacggct 342
Query: 181 ccatttaggaaatgagcgggactgtggggaactcgggacgggatttcaggtgccctcaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ccatttaggaaatgagcgggactgtggggaactcgggacgggatttcaggtgccctcaga 282
Query: 241 tattctt 247
|||||||
Sbjct: 281 tattctt 275
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space: 151844
Effective search space used: 151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no344_g03.g1 MSMg01no344_g03.g1 CHROMAT_FILE:
MSMg01no344_g03.g1 PHD_FILE: MSMg01no344_g03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:33 2005
(167 letters)
>mm_chr5_115089794_115090359
Length = 566
Score = 296 bits (153), Expect = 5e-85
Identities = 162/165 (98%), Gaps = 1/165 (0%)
Strand = Plus / Plus
Query: 1 cgtaacgtggtgaaggatgcaggagtccagactctacccaatgatcttctgtgtgtttgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cgtaacgtggtgaaggatgcaggagtccagactctacccaatgatcttctgtgtgtttgg 260
Query: 61 cccaaagagatacgcaaaccggggaggaggattacccaagcagagcagacccctccccct 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 cccaaagagatacgcaaaccggggaagaggattacccaagcagagcagacccctccccct 320
Query: 121 gcccactggggcggctcaccccgggaactcctcatcagtcaggcg 165
||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 321 gcccactggtgcggctcaccccgg-aactcctcatcagtcaggcg 364
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 167
Length of database: 566
Length adjustment: 8
Effective length of query: 159
Effective length of database: 558
Effective search space: 88722
Effective search space used: 88722
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
