Query= MSMg01no345_f05.b1 MSMg01no345_f05.b1 CHROMAT_FILE:
MSMg01no345_f05.b1 PHD_FILE: MSMg01no345_f05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:45 2005
(492 letters)
>mm_chr5_102994537_102995428
Length = 892
Score = 522 bits (270), Expect = e-152
Identities = 303/326 (92%), Gaps = 20/326 (6%)
Strand = Plus / Minus
Query: 187 tttagcatccacaagtgagagttcatgtgcgtg----------------cacacacacac 230
|||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 892 tttagcatccacaagtgagagttcatgtgcttgcacacacacacacacacacacacacac 833
Query: 231 acacacacagacacacacatactcatacacacatattcatgcacacacacattcatacac 290
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct: 832 acacacacagacacacacatactcatacacacacattcatgcacacacacattcatgcac 773
Query: 291 acatacacattcaagcacacacatattcatacatatactcatatacacacatactcat-- 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 acatacacattcaagcacacacatattcatacatatactcatatacacacatactcatac 713
Query: 349 --acacacacacacacacacttttgcctatacaaacttaccagcactacactgtcctctt 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 acacacacacacacacacacttttgcctatacaaacttaccagcactacactgtcctctt 653
Query: 407 cttgggtatttgcagtctcttgtgtttgtattagaaggctcacagaccccatggattagt 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 cttgggtatttgcagtctcttgtgtttgtattagaaggctcacagaccccatggattagt 593
Query: 467 aatagaaggtgtaagtccagagctac 492
||||||||||||||||||||||||||
Sbjct: 592 aatagaaggtgtaagtccagagctac 567
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space: 425124
Effective search space used: 425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no345_f05.g1 MSMg01no345_f05.g1 CHROMAT_FILE:
MSMg01no345_f05.g1 PHD_FILE: MSMg01no345_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:45 2005
(337 letters)
>mm_chr5_102829183_102829917
Length = 735
Score = 565 bits (292), Expect = e-165
Identities = 323/334 (96%), Gaps = 2/334 (0%)
Strand = Plus / Plus
Query: 1 agttcccaagcctggcgtggtgaagtttgcccgtaaacctggcatttggaggggaaagca 60
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttcccaagcctgatgtggtgaagtttgcccgtaaacctggcatttggaggggaaagca 260
Query: 61 ggaggaccagaagtttgaggtcattctctgccacatagtgagtgggagaccatctaggga 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 ggaggaccagaagtttgaggtcattctctgccacacagtgagtgggagaccatctaggga 320
Query: 121 gacatgagatccttgtaaaatggagaaaaatagaaagtgaaaatttcagtttttgcaacc 180
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 gacatgagatccttgtaaaatggagaaaaat--aaagtgaaaatttcagtttttgcaacc 378
Query: 181 taaatacctcccatggggtcctacgcaccctaacgtttttcatgtagagaagccagcctg 240
|||||||||||||||||||||||| |||||||| |||||||||||||| ||||||| |||
Sbjct: 379 taaatacctcccatggggtcctacacaccctaatgtttttcatgtagaaaagccagtctg 438
Query: 241 tctctgttttctaggcgtatcactagcaattctgttcaattggcttttaacaatgcatag 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tctctgttttcaaggcgtatcactagcaattctgttcaattggcttttaacaatgcatag 498
Query: 301 tcatcactgagatatagtttaaataaagcctagg 334
||||||||||||||||||| ||||||||||||||
Sbjct: 499 tcatcactgagatatagttcaaataaagcctagg 532
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 735
Length adjustment: 9
Effective length of query: 328
Effective length of database: 726
Effective search space: 238128
Effective search space used: 238128
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
