Query= MSMg01no345_j07.b1 MSMg01no345_j07.b1 CHROMAT_FILE:
MSMg01no345_j07.b1 PHD_FILE: MSMg01no345_j07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:03 2005
(600 letters)
>mm_chr5_73679547_73680549
Length = 1003
Score = 1064 bits (550), Expect = 0.0
Identities = 575/588 (97%), Gaps = 9/588 (1%)
Strand = Plus / Plus
Query: 16 gaattctcacctcctcttgcaccatgcctgcctggcagctgccatgcttctgccttgatg 75
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 gaattctcacctcctcctgcaccatgcctgcctggcagctgccatgcttctgccttgatg 275
Query: 76 ataatggctgaacttctgaacttgtaagccagccccaattaaatgttctccttataagag 135
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 276 ataatggctgaacttctgaacttgtaagccagccccaattaaatgttgtccttataagag 335
Query: 136 ttgccttggtcatgacgtctgttcacagcagtaaaactctaagacaactgttattcagaa 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ttgccttggtcatgacgtctgttcacagcagtaaaactctaagacaactgttattcagaa 395
Query: 196 atctttcttttcaaatacatattacagtgaaaacaatcctctgaaatccagactctctta 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 atctttcttttcaaatacatattacagtgaaaacaatcctctgaaatccagactctctta 455
Query: 256 gatgtggaagaaagtctctttcactaagacttgaataagagctgtgtctttgtggttata 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gatgtggaagaaagtctctttcactaagacttgaataagagctgtgtctttgtggttata 515
Query: 316 acaaagtggacagattcatatttgaccacaacacccaacacactgacattgaagtaaaaa 375
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 516 acaaagtggacagattcatatttgaccacaacacccaacacactgacgttgaaataaaaa 575
Query: 376 ccaaggaatatcaacaaacaatcgacgaaaactgagatgtttttaaaataag---gctta 432
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 576 ccaaggaatatcaacaaacaatcgacgaaaactgagatgtttttaaaataagaaggctta 635
Query: 433 cattgtcttttagaaatggcttcttcttagaacacttacatatgtgcagtatccgtgccc 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 cattgtcttttagaaatggcttcttcttagaacacttacatatgtgcagtatccgtgccc 695
Query: 493 gtgtgcacttgagttcacgagtgtgaaggtgccctcacagccacagccacagccacatgt 552
||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 696 gtgtgcacttgagttcacgagtgtgaaggtgccctcacagccacagccaca------tgt 749
Query: 553 gactctaggtaactctgtatcccgcaagctgttgctccagcttcctga 600
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 gactctaggtaactctgtatcccgcaagctgttgctccagcttcctga 797
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1003
Length adjustment: 10
Effective length of query: 590
Effective length of database: 993
Effective search space: 585870
Effective search space used: 585870
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no345_j07.g1 MSMg01no345_j07.g1 CHROMAT_FILE:
MSMg01no345_j07.g1 PHD_FILE: MSMg01no345_j07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:04 2005
(246 letters)
>mm_chr5_73875719_73876364
Length = 646
Score = 453 bits (234), Expect = e-132
Identities = 243/246 (98%)
Strand = Plus / Minus
Query: 1 caggtagaaaaaactaatcatttttttctagagcagatctggtagatgcttcagctgggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 caggtagaaaaaactaatcatttttttctagagcagatctggtagatgcttcagctgggt 387
Query: 61 ttttcctttctttcctttccttcctttcactttgtggaaattacacctgcctagggaatt 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tgttcctttctttcctttccttcctttcactttgtggaaattacacctgcctagggaatt 327
Query: 121 aacagagtttgaataaaaacgtattcattccttaccacgtcatctctgaattggattttc 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 326 aacagagtttgaataaaaacgtattcattccttaccacgtcgtctctgaattggattttc 267
Query: 181 tctctttgccccacatcgagctaatcaagtcctagtgatgctgcatgtgattcaatctca 240
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 266 tctctttgccccacatcgagctaatcaagtcctaatgatgctgcatgtgattcaatctca 207
Query: 241 gaagga 246
||||||
Sbjct: 206 gaagga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space: 150969
Effective search space used: 150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
