XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTA
CTACTACATAACATATTTGGGGGGACACCTTGGACACTTTGGAATGCCTG
TCCTTTACCGCCCAACTCACATGGAGGGGAGGATGGGCACATGGGCCCAG
ATTCCAATTTCAAGCCCATTCATTAGGTGTGTTTGCCAGCACGCCATTTC
TGAGAATGGCTGTATGGGAGGTGTATGTGCGCAGTGTCCATATGCATTTT
CCAAAGTATAGTCTAACAAAGGAGGTGTCTGGGATGTTTGTCCTCAAGAC
ATTTGGAGCCCAGTTATAAGGAGAGAGGCTTATGGGTATGTTCTACATAA
ACAAGCCTAGTCAAATGGGGGGTAGGGAGTGTAGACATGTTCTTGTCAAA
TGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTC
GTTTTTTTTTTTTTTTTTTTTTTTGCCCCTTCTCTCTTTTTTCCTTCCCC
CCCTTTTTCTTCCCTCTCTCTTTTTCCTTTTTCCCTCCTTCCTCCGCTCC
CCCTTTCTGGCTTTTCGTTCTCCCCTCTCTCCTCCTCTTTTCCTTTCTCC
CTCTTCCCCCCCCGTCTTTTTTTCCCCTTCCCTCCCCCGTCCCTCCCTCC
GCTTTCTTTTTTTGTCCCGCCGTCTTTTGCCNTTTTTGCCCACCTCTGTT
TGTGCCCCTTATTCTCGCTTCCGTCCCTTTTCCCTTCC

GGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCATCCCTGGGATCCCTGTGGTGGAAGGAGGGAG
CTGCCTTCTGACGTCATGTGTGAGACAGCAAGACCCTGCACACGCATAAT
AACTAGATGTAGCAGAAAAGTTTAAAGTAAAAGCAGCAAAGACTTCCCCC
AGCAGCCACGTGGGTAAGCAGCTGTGATTTTTATTAAGACAAGTAATTGA
TGACAGAGATTTAAAGGGAAATGTCACTTCACTAAATGAAGGCCAAAAAC
TATTTTCAACATAATTCTAGAACTATCCTCAAGTAATATTTAAATAAAAA
TTACATGCAGATTTATTTATAATAAGCCACAGCCACCAAGAGGTAAATAT
GATTTGAAAGTGTCTTATATAAAAAATATATTGCTTTATAATTCCTCAAA
TGCATATTGCCCCTTGAGAGCCTCGCCATACACCACTTATGTGGTCACTG
CATGTAGGATGCAGCCCCTCGCCTCTGCCTCTGAAGACCAGAGGACCGTC
TGCAAGGCATGGCTCGACTCCATCACTTGAAGACTTCAGAAAGCCTCTGC
TAACCTTGACCCGGCCCTTAGGAAAGCCCCAGTGCTGAAGTGAGAGAGCC
GGGACACTAAACCAAACAGGAAGAGGGCAGCGAAAGGAGAGATTCAAACT
CCTTACGATACAGGCTTTCATTACGCCTGG

Query= MSMg01no346_a05.b1 MSMg01no346_a05.b1 CHROMAT_FILE:
MSMg01no346_a05.b1 PHD_FILE: MSMg01no346_a05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:35 2005
         (378 letters)



>mm_chr5_111241958_111242734
          Length = 777

 Score =  677 bits (350), Expect = 0.0
 Identities = 371/378 (98%), Gaps = 1/378 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttggggggacaccttggacactttggaatgcctgtcctttaccgcccaactcacatgg 60
           |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 attt-gggggacaccttggacacgttggaatgcctgtcctttaccgcccaactcacatgg 259

                                                                       
Query: 61  aggggaggatgggcacatgggcccagattccaatttcaagcccattcattaggtgtgttt 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aggggaggatgggcacgtgggcccagattccaatttcaagcccattcattaggtgtgttt 319

                                                                       
Query: 121 gccagcacgccatttctgagaatggctgtatgggaggtgtatgtgcgcagtgtccatatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gccagcacgccatttctgagaatggctgtatgggaggtgtatgtgcgcagtgtccatatg 379

                                                                       
Query: 181 cattttccaaagtatagtctaacaaaggaggtgtctgggatgtttgtcctcaagacattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cattttccaaagtatagtctaacaaaggaggtgtctgggatgtttgtcctcaagacattt 439

                                                                       
Query: 241 ggagcccagttataaggagagaggcttatgggtatgttctacataaacaagcctagtcaa 300
           |||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 440 ggagcccagtcacaaggagagaggcttatgggtatgttctacataaacaagcctggtcaa 499

                                                                       
Query: 301 atggggggtagggagtgtagacatgttcttgtcaaatggggtgtgtgtgtgtgtgtgtgt 360
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 500 atggggggtagggagtgtagacatgttcttgtcaaatggtgtgtgtgtgtgtgtgtgtgt 559

                             
Query: 361 gtgtgtgtgtgtgtgtgt 378
           ||||||||||||||||||
Sbjct: 560 gtgtgtgtgtgtgtgtgt 577


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 777
Length adjustment: 9
Effective length of query: 369
Effective length of database: 768
Effective search space:   283392
Effective search space used:   283392
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no346_a05.g1 MSMg01no346_a05.g1 CHROMAT_FILE:
MSMg01no346_a05.g1 PHD_FILE: MSMg01no346_a05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:35 2005
         (623 letters)



>mm_chr5_111436292_111437314
          Length = 1023

 Score = 1166 bits (603), Expect = 0.0
 Identities = 618/623 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catccctgggatccctgtggtggaaggagggagctgccttctgacgtcatgtgtgagaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 catccctgggatccctgtggtggaaggagggagctgccttctgacgtcatgtgtgagaca 764

                                                                       
Query: 61  gcaagaccctgcacacgcataataactagatgtagcagaaaagtttaaagtaaaagcagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 gcaagaccctgcacacgcataataactagatgtagcagaaaagtttaaagtaaaagcagc 704

                                                                       
Query: 121 aaagacttcccccagcagccacgtgggtaagcagctgtgatttttattaagacaagtaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 aaagacttcccccagcagccacgtgggtaagcagctgtgatttttattaagacaagtaat 644

                                                                       
Query: 181 tgatgacagagatttaaagggaaatgtcacttcactaaatgaaggccaaaaactattttc 240
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 643 tgatgacagagatttaaagggaaatatcacttcactaaatgaaggccaaaaactattttc 584

                                                                       
Query: 241 aacataattctagaactatcctcaagtaatatttaaataaaaattacatgcagatttatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 aacataattctagaactatcctcaagtaatatttaaataaaaattacatgcagatttatt 524

                                                                       
Query: 301 tataataagccacagccaccaagaggtaaatatgatttgaaagtgtcttatataaaaaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 tataataagccacagccaccaagaggtaaatatgatttgaaagtgtcttatataaaaaat 464

                                                                       
Query: 361 atattgctttataattcctcaaatgcatattgccccttgagagcctcgccatacaccact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 atattgctttataattcctcaaatgcatattgccccttgagagcctcgccatacaccact 404

                                                                       
Query: 421 tatgtggtcactgcatgtaggatgcagcccctcgcctctgcctctgaagaccagaggacc 480
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tatatggtcactgcatgtaggatgcagcccctcgcctctgcctctgaagaccagaggacc 344

                                                                       
Query: 481 gtctgcaaggcatggctcgactccatcacttgaagacttcagaaagcctctgctaacctt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 gtctgcaaggcatggctcgactccatcacttgaagacttcagaaagcctctgctaacctt 284

                                                                       
Query: 541 gacccggcccttaggaaagccccagtgctgaagtgagagagccgggacactaaaccaaac 600
           |||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||
Sbjct: 283 gacccggcccttaggaaagccccagtgctggagtgagggagccgggacattaaaccaaac 224

                                  
Query: 601 aggaagagggcagcgaaaggaga 623
           |||||||||||||||||||||||
Sbjct: 223 aggaagagggcagcgaaaggaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space:   620969
Effective search space used:   620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)