TCGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAA
ATATCGCATAAGCAAAACCATTGTTTTGAAGAGGCTCGAGGCAATTCTTT
AGTGAAAGGCAAGCCAGAGAGCTATGTAGTCTCTAAGTATTTGACATGTC
CTTGACACTTTGTGTTTACCAAACAAGGTATCCATCTATCCTTCTGTCTG
TCTGTCTAAACATCAAGTATGTATTCATACATCTGTCCATCTACTTGTCT
ATTGTCTTTTAATGCAGATAGTCTGTCTGTCTATTATTTCAATCTATCTA
TCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATC
TATCTATCTATCCATCTATCTATCTATCTATCTATCATCTATCTACACAT
ACACACATATAAACACATATGTGTATGAGTGTGTACATGTGTATAATATG
TTATAAATGCTAAGCATACAGAAACTTATTAATCATTCTTGATCTTAATG
AAAGAATTAATTATACTGATAAAACTAAAGGACATAACTTACAAACATCA
TAAGTTATGCTTTAATAGATTTTATTGGAAAAGATACATTTGAACACAAA
TTACCATTTTCCAAATCCTGTACATAAAATTCTGAGTTTCTAAATTGGGT
CATGCCTGTATAATAACATGAAAATACATGTGTACTAAACAGTAATTCAT
TTGTATAAGCTAACATTGCCAAACGCATTCCAAATACG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCACCTGAGGAATATCGAATGGCAGAGAAGCACC
TGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACA
ACCCTGAGATTCCACCTCACACCAGTCAAAATGGCTAAGATCAAAAATTC
AGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCC
ATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGG
CGGTTCCTCAGAAAATTGGACACAGTACTACCGGAGGATCCAGCAATACC
TCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACAT
GCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAA
GAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTATAT
CTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAAT
TCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACA
CATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATGTTA
GCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTCCTATACCCAT
GAAACTCTAGAAAAATGAAGACTGAAGTGTGGACACTATGCCCC

Query= MSMg01no346_f12.b1 MSMg01no346_f12.b1 CHROMAT_FILE:
MSMg01no346_f12.b1 PHD_FILE: MSMg01no346_f12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:01 2005
         (572 letters)



>mm_chr5_18841456_18842427
          Length = 972

 Score =  652 bits (337), Expect = 0.0
 Identities = 408/461 (88%), Gaps = 47/461 (10%)
 Strand = Plus / Minus

                                                                       
Query: 112 tccttgacactttgtgtttaccaaacaaggtatccatctatccttctgtctgtctgtcta 171
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 972 tccttggcactttgtgtttaccaaacaaggtatccatctatccttctgtctgtctgtcta 913

                                                                       
Query: 172 aacatcaagtatgtattcatacatctgtccatctacttgtctattgtcttttaatgcaga 231
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 912 aacatcaagtatgtattcatgcatctgtccatctacttgtctattgtcttttaatgcaga 853

                                                                       
Query: 232 tagtctgtctgtctattatttcaatctatctatctatctatctatctatctatctatcta 291
           |||||||||| |||||||||||||||                 |   |||||||||||||
Sbjct: 852 tagtctgtctatctattatttcaatc-----------------a---atctatctatcta 813

                                                                       
Query: 292 tctatctatctatctatctatctatctatctatccatctatctatctatctatctatcat 351
           |||||||||||||||||||||||||||||||                           ||
Sbjct: 812 tctatctatctatctatctatctatctatct---------------------------at 780

                                                                       
Query: 352 ctatctacacatacacacatataaacacatatgtgtatgagtgtgtacatgtgtataata 411
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 779 ctatctacacatacacacatataaatacatatgtgtatgagtgtgtacatgtgtataata 720

                                                                       
Query: 412 tgttataaatgctaagcatacagaaacttattaatcattcttgatcttaatgaaagaatt 471
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 tgttataaatgctaagcatacagaaacttattaatcattcttgatcttaatgaaagaatt 660

                                                                       
Query: 472 aattatactgataaaactaaaggacataacttacaaacatcataagttatgctttaatag 531
           |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 aattataccgataaaaccaaaggacataacttacaaacatcataagttatgctttaatag 600

                                                    
Query: 532 attttattggaaaagatacatttgaacacaaattaccattt 572
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 attttattggaaaagatacatttgaacacaaattaccattt 559


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space:   540644
Effective search space used:   540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)