XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGGCATCTGTTT
CAGTTCATTACCATCGGCTGGACGTTGGTGATAACAAGCAGGTTACTGGA
GAAAAGAGTCAGATGTGGATGCCGCTTCATCACCCTCGTCTCAGGGAGAG
AGACTCAATTTCCATAAAATGCTTGAGTAAGATCATTTCCCTACCCCTAA
ATTCGGCCATCAGTCTCATGCCACGAATCATTTATAGATTGCCGTAGTCT
GTGCTTCCGACATGGTAATATACATTCTTGCCACATTGGAAAATAAACAG
TCATTCCAGGCTAGACACATTGAAAAATTGGAACTTGAAGCTGTCGCCCA
TGAGAGTTGTGAGACTAAACACTGCACAGAGATTAGTCTGGATGCTGTTA
GACAGTCTCTGAGAGGCATGTCTGATTGCATGAAGGTTGAGTGCCCTAGA
GTCCTTTCCCCAGGAAAAACGGCATGGGAGCAGGTCAGGGTTACTCTGGG
TAAAAATCTGTGGGAGTGAGAGTCAATCCTGTACATGGCCCCTAACATTG
CACACTGGGGATCAGACCTCTACCTCTACCAACGGAGCTTGCTTCGTTCC
TAAATCCCTTGGCTAGCCCAGGTTATACCCAACAGACTGAACCGGTAAAT
CCAGCCTCATAGAGGACTTGTCCTTGTGGCCTTCGCGGNTTTAAAGAAAC
ACCCCGTGAAGAAACAGAGGTTTATGTGGGCCGGTAAAAATCG

GGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCACCTGTGGTGCTTGCAAGTTTCCAGATAGAGG
ACTCTTTTATTCCATAGCCTACACACCAGCCCTGACTATAGCTAAGCAAC
GGGGGCTGGAGTTCCATTTCTCCTGCCTAGTGATAATAATCTCTGTATCC
TGATGCTCCCGCTGAGGGGCCAAAAGGGACTGAAGAAAGGGTCTAGAAGG
CTGAGGAGCTATGAAAAACATGTTGTAAAGATTTCCTTATAAGCCAATAA
ATAATTTACAGGAAGGGAATTTAAGAGTTAAAAACTGGGTCTGCAGAGAT
ATTAAGTTAGTGAAGAGCTTGGTGAGCAAGCATGAAGACTTCAGTTCAGC
TCTCTAGTACTCATGGACACAAACCAATATGATAGTTTGGGTCTGTAATC
CCAGCTCTGGAGAGGCAGAGGCAGATACTGGAAGACCCTTGGGCTCAGTG
GTCCATTAATGTAGCTGTAGCAGTAAGTTCTGAGGCCCTGTTTCAAAAAC
TAATATGAAAATCTACTGAGGAAAATACCCAATGATAACCTCTGGGCTCC
ACACACATGTGCATGCACACATGCATTTATGGACACACACACACACACAC
ACACCCNNNAAAANANAAAAANANANANANANANACANACANANANANAC
ACACACANNCCCCCCCCCNCCCTCCTTTTTTTTTTCCCCACCCCCCN

Query= MSMg01no346_h16.g1 MSMg01no346_h16.g1 CHROMAT_FILE:
MSMg01no346_h16.g1 PHD_FILE: MSMg01no346_h16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:11 2005
         (504 letters)



>mm_chr5_3246070_3246973
          Length = 904

 Score =  946 bits (489), Expect = 0.0
 Identities = 501/505 (99%), Gaps = 1/505 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcacctgtggtgcttgcaagtttccagatagaggactcttttattccatagcctacacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcacctgtggtgcttgcaagtttccagatagaggactcttttattccatagcctacacac 260

                                                                       
Query: 61  cagccctgactatagctaagcaacgggggctggagttccatttctcctgcctagtgataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagccctgactatagctaagcaacgggggctggagttccatttctcctgcctagtgataa 320

                                                                       
Query: 121 taatctctgtatcctgatgctcccgctgaggggccaaaagggactgaagaaagggtctag 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaactctgtatcctgatgctcccgctgaggggccaaaagggactgaagaaagggtctag 380

                                                                       
Query: 181 aaggctgaggagctatgaaaaacatgttgtaaagatttccttataagccaataaataatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaggctgaggagctatgaaaaacatgttgtaaagatttccttataagccaataaataatt 440

                                                                       
Query: 241 tacaggaagggaatttaagagttaaaaactgggtctgcagagatattaagttagtgaaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacaggaagggaatttaagagttaaaaactgggtctgcagagatattaagttagtgaaga 500

                                                                       
Query: 301 gcttggtgagcaagcatgaagacttcagttcagctctctagtactcatggacacaaacca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcttggtgagcaagcatgaagacttcagttcagctctctagtactcatggacacaaacca 560

                                                                       
Query: 361 atatgatagtttgggtctgtaatcccagctctggagaggcagaggcagatactggaagac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atatgatagtttgggtctgtaatcccagctctggagaggcagaggcagatactggaagac 620

                                                                       
Query: 421 ccttgggctcagtggtccattaatgtagctgtagcagtaagttctgaggccctgtttcaa 480
           ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 621 ccttgggctcaatggtccattaatgtagccgtagcagtaagttctgaggccctgtttcaa 680

                                    
Query: 481 aaa-ctaatatgaaaatctactgag 504
           ||| |||||||||||||||||||||
Sbjct: 681 aaaactaatatgaaaatctactgag 705


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space:   441636
Effective search space used:   441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)